View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_high_33 (Length: 235)
Name: NF1503_high_33
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1503_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 29090350 - 29090553
Alignment:
Q |
1 |
cacattgagtttgtaaacaccttcatcaacaatcgattttctaaccgtggtgtaaacgtttacacactcttttccgtaaccgttagaaaccatgcactcg |
100 |
Q |
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T |
29090350 |
cacattgagtttgtaaacaccttcatcaacaatcgattttctaaccgtggtgtaaacgtttacacactcttttccgtaaccgttagaaaccatgcactcg |
29090449 |
T |
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Q |
101 |
gcaataatttttaaatcatccaccacatcggaagaaacgcgttcaacttcagagatacaatcctgtgcatcgtgatcatcgtcgtcttccagtgttccac |
200 |
Q |
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T |
29090450 |
gcaataattttcaaatcatccaccacatcggaagaaacgcgttcaacttcagagatacaatcctgtgcatcgtgatcatcgtcgtcttccagtgttccac |
29090549 |
T |
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Q |
201 |
catc |
204 |
Q |
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T |
29090550 |
catc |
29090553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 204
Target Start/End: Original strand, 29104615 - 29104814
Alignment:
Q |
5 |
ttgagtttgtaaacaccttcatcaacaatcgattttctaaccgtggtgtaaacgtttacacactcttttccgtaaccgttagaaaccatgcactcggcaa |
104 |
Q |
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T |
29104615 |
ttgagtttataaataccttcatcgacgatggattttctcaccgtggtgtaaactcttatacattcttttccataaccgttttttaccatgcactcagcaa |
29104714 |
T |
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Q |
105 |
taatttttaaatcatccaccacatcggaagaaacgcgttcaacttcagagatacaatcctgtgcatcgtgatcatcgtcgtcttccagtgttccaccatc |
204 |
Q |
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T |
29104715 |
taattctcaaatcatccacagcatcggaagaaatgcgttcgacttcagagatacaatcctctgcagcgcgaatatcatcttcttccggtgttcctccatc |
29104814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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