View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_high_7 (Length: 490)
Name: NF1503_high_7
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 209 - 475
Target Start/End: Complemental strand, 39548706 - 39548440
Alignment:
| Q |
209 |
tcaattgtcctacttttgatcctccaatgatatttatcattaaaaaatatgatgatatttgagatgttcatctatttatatatctctttgtaaattagaa |
308 |
Q |
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| T |
39548706 |
tcaattgtcctacttttgatcctccagtgatatttatcattaaaaaatatgataaaatttgagatgttcatccatttatatatctctttgtaaattagaa |
39548607 |
T |
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| Q |
309 |
ttgtgcctacgtgacacctttagaaaagcttaatttctcctatcttattttatccaaaaatctaagactccgatgtaagttacaaatcctcattaacttg |
408 |
Q |
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| T |
39548606 |
ttgtccatacgtgacacctttagaaaaccttaatttctcctatcttattttatccaaaaatctaagactcccgtgtaagttacaaatcctcattaacttg |
39548507 |
T |
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| Q |
409 |
acttcatgttgcataatgaatactttatacatctcaattttataaaaaattgatcggttacattttt |
475 |
Q |
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| T |
39548506 |
acttcatgttgcataatgaatactttatacatctcaattttataaaaaattgatcggttacattttt |
39548440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 39549044 - 39548891
Alignment:
| Q |
5 |
tgtcgaataatattatattgtttgatgtttgtgcatggagggcattgttagattgttaggcatatttgccgatgactttggtgctaaaattaattgtcgt |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39549044 |
tgtcgactaatattatattgtttgatgtttgtgcatggagggcattgttagattgttaggcatatttgccgatgactttggtgctaaaattaattgtctt |
39548945 |
T |
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| Q |
105 |
gtcatcacagaaaaagatgatgatatttgtttggaataaaaatacaagataggt |
158 |
Q |
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| T |
39548944 |
gtcatcatagaaaaagatgatgatatttgtttggaataaaaatacaagataggt |
39548891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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