View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_high_8 (Length: 441)
Name: NF1503_high_8
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_high_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 4 - 441
Target Start/End: Original strand, 29089805 - 29090242
Alignment:
| Q |
4 |
atgtcgaagaatatttcagaaagcacgttgctgtaatctgtaagcttggtaagatattgcattgtttgcattgtaagggaatgaataccgccgaaattgg |
103 |
Q |
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| T |
29089805 |
atgtcgaagaatatttcagaaagcacgttgctgtaatctgtaagcttggtaagatattgcattgtttgcgttgtaagggaatgaataccgccgaaattcg |
29089904 |
T |
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| Q |
104 |
ccagcgatttggaagagtccttcaggattgcggactcgaattctgagaaaatatttcttacagattcaacgagtctttgttgtgaattatatgcttgaga |
203 |
Q |
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| T |
29089905 |
ccagcgatttggaagagtccttcaggattgcggactcgaattctgagaaaatatttcttacagattcaacgagtctttgttgtgaattatatgcttgaga |
29090004 |
T |
|
| Q |
204 |
tttaacaccagaggttgaatcgaacgagaaaatcgattcaacctccggtaacaacacggtgattgtggcatacatatcaagcaaacggaacatcttctcc |
303 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29090005 |
tttaacaccagaggttgaattgaaagagaaaatcgattcaacctccggtaacaacatggtgattgtggcatacatatcaagcaaacggaaaatcttctcc |
29090104 |
T |
|
| Q |
304 |
ggtgtcaatttctttgttttcgcaccgaattcaggaaatcgtaagagacgagtagctccatctcttgaaatttaacccaaacaagcttctctgttggaat |
403 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||| |
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| T |
29090105 |
ggtgtccatttctttgttttcgcaacgaattcaggaaatcgtaagagaagagtagctccatctcttgaaatttcaccaaaacaagcttctctgatggaat |
29090204 |
T |
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| Q |
404 |
tcgaagcgaaaattctttctcagaggtttctctctcca |
441 |
Q |
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| T |
29090205 |
tcgaagcgaaaattcgttcgcagaggtttctctctcca |
29090242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 4 - 440
Target Start/End: Original strand, 29104066 - 29104502
Alignment:
| Q |
4 |
atgtcgaagaatatttcagaaagcacgttgctgtaatctgtaagcttggtaagatattgcattgtttgcattgtaagggaatgaataccgccgaaattgg |
103 |
Q |
| |
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||||| |||||||| ||||| ||||||||||||||||||| ||| | | ||||| |||||||||| | ||| |||||||||| ||||||||||| | |
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| T |
29104066 |
atgtcaaagaatatctcagagagcacgttgctgtaatctgcaagagtaatgagatactgcattgtttcctctgtcagggaatgaactccgccgaaatttg |
29104165 |
T |
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| Q |
104 |
ccagcgatttggaagagtccttcaggattgcggactcgaattctgagaaaatatttcttacagattcaacgagtctttgttgtgaattatatgcttgaga |
203 |
Q |
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|| ||||||||||| ||||||| |||| ||||| ||||| | | || ||||| |||| | || | | || ||||| ||||||||||||||||| |
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| T |
29104166 |
ccgctgatttggaagaatccttcaatattgtagactcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgaga |
29104265 |
T |
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| Q |
204 |
tttaacaccagaggttgaatcgaacgagaaaatcgattcaacctccggtaacaacacggtgattgtggcatacatatcaagcaaacggaacatcttctcc |
303 |
Q |
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|||||| | | ||||||| ||||||||||| ||||||| |||||| ||||||||||||||||| || |||||||||||||| || || ||||||||| |
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| T |
29104266 |
tttaacgactgctgttgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaagcgaaaaatcttctcc |
29104365 |
T |
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| Q |
304 |
ggtgtcaatttctttgttttcgcaccgaattcaggaaatcgtaagagacgagtagctccatctcttgaaatttaacccaaacaagcttctctgttggaat |
403 |
Q |
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|| | ||||||||||||| ||| ||| ||||||||||| ||| || | |||||||||| | ||||| | | | |||||||||||| || |||||| |
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| T |
29104366 |
ggctttgatttctttgtttttgcaacgacttcaggaaatcttaaaagtaaaatagctccatccttagaaatctcagcaaaacaagcttctttgatggaat |
29104465 |
T |
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| Q |
404 |
tcgaagcgaaaattctttctcagaggtttctctctcc |
440 |
Q |
| |
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|||||||||| |||| || |||||||| |||||||| |
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| T |
29104466 |
tcgaagcgaagattcgatcgcagaggttcctctctcc |
29104502 |
T |
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