View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_low_1 (Length: 626)
Name: NF1503_low_1
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 187 - 607
Target Start/End: Original strand, 7564329 - 7564749
Alignment:
| Q |
187 |
atcaatggaatctgtgaatgcaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca |
286 |
Q |
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| T |
7564329 |
atcaatggaatctgtgaatggaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca |
7564428 |
T |
|
| Q |
287 |
gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacattaaataaataacacataagacgaaaacacatatggagaatctctgagacccaacatag |
386 |
Q |
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| T |
7564429 |
gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacattaaataaataacacataagacgaaaacacatatggagaatctctgagatccaacatag |
7564528 |
T |
|
| Q |
387 |
caaagcgtgtaggtcaaggtgatatgagactctcaacatagacattagacgagaaatcggtaaaagcgacattttgaatccccgaaatctttacggtacc |
486 |
Q |
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| T |
7564529 |
caaagcgtgtaggtcaaggtgatacgagactctcaacatagacattagaggagaaatcggtaaaagcgagattttgaatccccgaaatctttacggtacc |
7564628 |
T |
|
| Q |
487 |
attcttataattgtaaacatataacttaccacaaaagtcaagcaacacttggtcatcctcctcataaataaaaagcagacgtgcatagaaataatcaatg |
586 |
Q |
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| T |
7564629 |
attcttataattgtaaacatataacttaccacaaaagtcaagcaacacttggtcatcctcctcatagataaaaagcacaggtgcatagcaattatcactg |
7564728 |
T |
|
| Q |
587 |
aattctgtgaatggaacactg |
607 |
Q |
| |
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| T |
7564729 |
aattctttgaatggaacactg |
7564749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 7564190 - 7564330
Alignment:
| Q |
1 |
aattaatttattttctcaaattatttctcgaatggacaagtcggtgtcgtgtttgtgcttcatagcaagaaaaagcaggagcataagcataagcataacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7564190 |
aattaatttattttctcaaattatttctcgaatggacaagttagtgtcgtgtttgtgcttcatagcaagaaaaagcaggagcataagcataagcataacc |
7564289 |
T |
|
| Q |
101 |
acctctcattaattagcaagataaaggttaatagtatcaat |
141 |
Q |
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| T |
7564290 |
acctctcattaagtagcaagataaaggttaatagtatcaat |
7564330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 176668 - 176599
Alignment:
| Q |
362 |
ggagaatctctgagacccaacatagcaaagcgtgtaggtcaaggtgatatgagactctcaacatagacat |
431 |
Q |
| |
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| T |
176668 |
ggagaatctttgagagccagcagagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat |
176599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 435
Target Start/End: Original strand, 370569 - 370608
Alignment:
| Q |
396 |
taggtcaaggtgatatgagactctcaacatagacattaga |
435 |
Q |
| |
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|
| T |
370569 |
taggtcaaggtgatatgagactctcaacgtagacattaga |
370608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 1459314 - 1459355
Alignment:
| Q |
394 |
tgtaggtcaaggtgatatgagactctcaacatagacattaga |
435 |
Q |
| |
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||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
1459314 |
tgtaggtcaaggtgatatgagactctctgcgtagacattaga |
1459355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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