View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_low_10 (Length: 426)
Name: NF1503_low_10
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 9876898 - 9877308
Alignment:
| Q |
1 |
agagataagttgttttattgaagaaatttctatggtggtaatagttaaaccaactgaagaaaaccatgaagctgctcatatacccaccaagccttttctc |
100 |
Q |
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| T |
9876898 |
agagataagttgttttattgaagaactttctatggtggtaatagttaaaccaactgaagaaaaccatgaagctgctcatatacccactaagccttttctc |
9876997 |
T |
|
| Q |
101 |
tctatatgttattcagttctgcatgttcttggtaggttaactttcttacttcaaatctttaattatattcaaggtttgatgtgtgtttaaacatttgtat |
200 |
Q |
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| T |
9876998 |
tctatatgttattcagttctgcatgttcttggtaggttaactttcttaattcaaatctttaattatattcaaggtttgatgagtgtttaaacatttgtat |
9877097 |
T |
|
| Q |
201 |
taacacattgttactatgtgtacacagaaaaaattggcccaacaatggctgttttgagacaagatgtgtaccaaaatatcaaggtacaaagaaaatccat |
300 |
Q |
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| T |
9877098 |
taacacattgttactatgtgtacacagaaaaaattggcccaacaatggctgttttgagacaagatgtgtaccaaaatatcaaggtacaaagaaaatccat |
9877197 |
T |
|
| Q |
301 |
agctaaatctttcaattcagctgattagttaattatattaaccacctagttaacccttacttaaccttctcttaatgcannnnnnnatagaaaaaatgtt |
400 |
Q |
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| T |
9877198 |
agctaaatctttcaattcagctgattagttaattatattaaccacctagttaacccttacttaaccttctcttaatgcatttttttatagaaaaaatgtt |
9877297 |
T |
|
| Q |
401 |
agggattatat |
411 |
Q |
| |
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| T |
9877298 |
agggattatat |
9877308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 9871252 - 9871603
Alignment:
| Q |
1 |
agagataagttgttttattgaagaaatttctatggtggtaatagttaaaccaactgaagaaaaccatgaagctgctcatatacccaccaagccttttctc |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||| | || ||||||||||| ||| |||||| | |||||||||||| || || | |||||||| ||| |
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| T |
9871252 |
agagataagttgttttattgaagagctttctatgattgtgatagttaaaccttctggagaaaatcttgaagctgctcacatccctattaagcctttcctc |
9871351 |
T |
|
| Q |
101 |
tctatatgttattcagttctgcatgttcttggtaggttaactttcttacttcaaatc----tttaatta----tattcaaggtttgatgtgtgtttaaac |
192 |
Q |
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||||||||||||| ||||| || |||||||||| ||| || |||||||||||| ||| |||| | ||||| ||||||||| || ||| |
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| T |
9871352 |
tctatatgttatttggttctacaagttcttggtatgtt---ttctttacttcaaatcttaatttcattattattgttcaaattttgatgtgagt---aac |
9871445 |
T |
|
| Q |
193 |
atttgtattaacacattgtt-----actatgtgtaca-------cagaaaaaattggcccaacaatggctgttttgagacaagatgtgtaccaaaatatc |
280 |
Q |
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|| | ||||||||||||||| | ||||||| | |||| ||||| || |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9871446 |
atctatattaacacattgtttattaaatatgtgtctaataattacagataaaatagggccaacaatggctgttttgagacaagatgtgtatcaaaatatc |
9871545 |
T |
|
| Q |
281 |
aaggtacaaagaaaatccatagct-aaatctttcaattcagctgattagttaattata |
337 |
Q |
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|||||||||||||||||| ||||| ||| ||||||||||||| |||| || |||||| |
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| T |
9871546 |
aaggtacaaagaaaatccgtagctaaaaaatttcaattcagcttattacttgattata |
9871603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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