View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503_low_13 (Length: 404)

Name: NF1503_low_13
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503_low_13
NF1503_low_13
[»] chr1 (10 HSPs)
chr1 (54-394)||(24352580-24352920)
chr1 (51-394)||(24340212-24340555)
chr1 (244-378)||(24367144-24367278)
chr1 (306-370)||(24415834-24415898)
chr1 (101-289)||(24310022-24310213)
chr1 (243-293)||(24369476-24369526)
chr1 (316-373)||(24322835-24322892)
chr1 (67-147)||(24322273-24322353)
chr1 (311-378)||(24310265-24310332)
chr1 (107-153)||(24365193-24365239)
[»] scaffold0508 (1 HSPs)
scaffold0508 (15-176)||(12069-12230)
[»] chr4 (31 HSPs)
chr4 (94-155)||(45366400-45366461)
chr4 (101-155)||(45372251-45372305)
chr4 (305-381)||(49041081-49041157)
chr4 (244-291)||(48147754-48147801)
chr4 (244-291)||(48735419-48735466)
chr4 (244-293)||(45372107-45372156)
chr4 (94-147)||(48870374-48870427)
chr4 (94-147)||(48886060-48886113)
chr4 (240-297)||(48902925-48902982)
chr4 (244-293)||(49041199-49041248)
chr4 (247-291)||(7908325-7908369)
chr4 (245-288)||(7237763-7237806)
chr4 (245-288)||(7771396-7771439)
chr4 (245-288)||(7790081-7790124)
chr4 (244-291)||(45384905-45384952)
chr4 (244-291)||(50250818-50250865)
chr4 (245-291)||(7877727-7877773)
chr4 (245-291)||(48705396-48705442)
chr4 (105-155)||(49044378-49044428)
chr4 (114-155)||(37827176-37827217)
chr4 (244-293)||(48170597-48170646)
chr4 (244-289)||(48852663-48852708)
chr4 (244-289)||(48870539-48870584)
chr4 (244-289)||(48875843-48875888)
chr4 (244-289)||(48886225-48886270)
chr4 (244-289)||(48898701-48898746)
chr4 (102-155)||(48902778-48902831)
chr4 (77-153)||(7771222-7771298)
chr4 (77-153)||(7789907-7789983)
chr4 (178-222)||(45366327-45366371)
chr4 (244-288)||(49048613-49048657)
[»] chr5 (5 HSPs)
chr5 (244-291)||(29696203-29696250)
chr5 (244-296)||(179031-179083)
chr5 (314-349)||(29712421-29712456)
chr5 (244-290)||(29712504-29712550)
chr5 (101-155)||(42562513-42562567)
[»] chr3 (5 HSPs)
chr3 (244-293)||(11005988-11006037)
chr3 (244-293)||(11024563-11024612)
chr3 (240-289)||(47451946-47451995)
chr3 (113-152)||(47452092-47452131)
chr3 (244-293)||(11015551-11015600)
[»] chr8 (3 HSPs)
chr8 (244-291)||(4031938-4031985)
chr8 (244-289)||(12200304-12200349)
chr8 (244-289)||(12444732-12444777)
[»] chr6 (1 HSPs)
chr6 (244-288)||(21979678-21979722)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 54 - 394
Target Start/End: Original strand, 24352580 - 24352920
Alignment:
Q  54 tgattataacgaacctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttg 153  Q
    ||||||||| |||||||||||||| ||||||| |||||| |||||||||| | | ||||||||| ||||||||| |||||||||||||||||||  | |     
T  24352580 tgattataatgaacctgttccactaaaccctaattttcctcttccggaatttgaatttgatcttgaaattaaagcttcatgtagagggtttatatatgtt 24352679  T
Q  154 caaattcgttcaaaagcttatatatggaatccatccaccggattttatagaaaaatacctttccctcctagtgtttcacatttagttttttatggttttg 253  Q
    || | | ||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  24352680 cacacttgttcagaagcttatatatggaatccatccaccggatttcttagacaaatacctttccctcctaatgtttcaaatttaattttttatggttttg 24352779  T
Q  254 ggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgtgag 353  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24352780 ggtatgacgaatcaacatatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgtgag 24352879  T
Q  354 ccctacccatttgcctttttgtagtaagtcctcttcctttg 394  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  24352880 ccctacccatttgcctttttgtagtaagtcctctccctttg 24352920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 51 - 394
Target Start/End: Original strand, 24340212 - 24340555
Alignment:
Q  51 cgatgattataacgaacctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataatt 150  Q
    |||||||||||| |||||||||||||| ||||||| |||||| |||||||||| | | ||||||||| ||||||||| |||||||||||||||||||  |    
T  24340212 cgatgattataatgaacctgttccactaaaccctaattttcctcttccggaatttgaatttgatcttgaaattaaagcttcatgtagagggtttatatat 24340311  T
Q  151 ttgcaaattcgttcaaaagcttatatatggaatccatccaccggattttatagaaaaatacctttccctcctagtgtttcacatttagttttttatggtt 250  Q
     | || | | ||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||| ||||| ||||||||||||    
T  24340312 gttcacacttgttcagaagcttatatatggaatccatccaccggatttcttagacaaatacctttccctcctaatgtttcaaatttaattttttatggtt 24340411  T
Q  251 ttgggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgt 350  Q
    ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24340412 ttgggtatgacgaatcaacatatgattacttggtggtttcagtttaatatgtttacttggggattttctcattgagagctaatgcgtggaacgaaattgt 24340511  T
Q  351 gagccctacccatttgcctttttgtagtaagtcctcttcctttg 394  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  24340512 gagccctacccatttgcctttttgtagtaagtcctctccctttg 24340555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 244 - 378
Target Start/End: Original strand, 24367144 - 24367278
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttcatatgtttacttggggattttctcattgagagctaatgcgtggaacg 343  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||  | || |||| ||||||||||||||||||||||||||||||||||||||| |    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggtttcgttatcctatgattacttggggattttctcattgagagctaatgcgtggaatg 24367243  T
Q  344 aaattgtgagccctacccatttgcctttttgtagt 378  Q
    ||| |||| |  ||||||||||| |||||||||||    
T  24367244 aaactgtgggtactacccatttggctttttgtagt 24367278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 24415834 - 24415898
Alignment:
Q  306 cttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctt 370  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  24415834 cttgaggattttctcattgagagctaatgtgtggaacgaaattgtgagtcctacccatttgcctt 24415898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 289
Target Start/End: Original strand, 24310022 - 24310213
Alignment:
Q  101 aatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgcaaattcgttcaaaagcttatatatggaatccatccaccggatttta 200  Q
    ||||| ||||||||||| || ||| ||||||||||||||| |||||| | ||| |   |  ||||||   |||  |||||||||||||||||||| || |    
T  24310022 aatctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttca 24310121  T
Q  201 tagaaaaatacctttccctcct---agtgtttcacatttagttttttatggttttgggtatgacgagtcaacagatgattacttggtggttt 289  Q
    |||| |||||||||  ||||||   | |  ||||| ||||  ||| ||||||||||| ||||||||||||| ||||||||||||||| ||||    
T  24310122 tagacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagttt 24310213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 24369476 - 24369526
Alignment:
Q  243 ttatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 293  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  24369476 ttatggttttggctatgacgagtcaacagatgattacctggtggtttcagt 24369526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 24322835 - 24322892
Alignment:
Q  316 ttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgccttttt 373  Q
    ||||| |||||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  24322835 ttctctttgagagctaatgcgtggaacgaaattgtgggtcctacacatttgccttttt 24322892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 24322273 - 24322353
Alignment:
Q  67 cctgttccactgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttata 147  Q
    ||||||| |||| |||||| ||||   |||||  ||||||||||||||||| || ||| ||||||||||||||||| ||||    
T  24322273 cctgttctactggaccctaattttttgcttcctaaatcttattttgatcttaaagttagaggttcatgtagagggtatata 24322353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 24310265 - 24310332
Alignment:
Q  311 ggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagt 378  Q
    ||||||| ||| |||||||||||| ||| |||||||||||||| ||| | ||||| ||||||| ||||    
T  24310265 ggattttttcaatgagagctaatgtgtgcaacgaaattgtgagtcctgcacatttacctttttatagt 24310332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 24365193 - 24365239
Alignment:
Q  107 attttgatcttcaaattaaaggttcatgtagagggtttataattttg 153  Q
    ||||||||||| |||||| |||||||||||||||||| ||| |||||    
T  24365193 attttgatcttaaaattataggttcatgtagagggttcatatttttg 24365239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 12069 - 12230
Alignment:
Q  15 atttcgatctatagatttaccgtcattgtttacccacgatgattataacgaacctgttccactgaaccctagttttccacttccggaatcttattttgat 114  Q
    |||||||||||||||||||| |||||||||||   ||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  12069 atttcgatctatagatttactgtcattgtttagggacgatgattattatgaacctgttccgctgaaccctagttttccacttccggaatctcattttgat 12168  T
Q  115 cttcaaattaaaggttcatgtagagggtttataattttgcaaattcgttcaaaagcttatat 176  Q
    |||||||||||||||||||||||| |||||||| ||||||| | | ||||||| ||||||||    
T  12169 cttcaaattaaaggttcatgtagaaggtttatatttttgcacacttgttcaaaggcttatat 12230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 45366461 - 45366400
Alignment:
Q  94 cttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 155  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||| |||||| |||||||    
T  45366461 cttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttgca 45366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 45372305 - 45372251
Alignment:
Q  101 aatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 155  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  45372305 aatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgca 45372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 381
Target Start/End: Complemental strand, 49041157 - 49041081
Alignment:
Q  305 acttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgcctttttgtagtaag 381  Q
    |||||| |||||||||||||| |||||||| |||||| ||||||||| |  ||| ||||| ||||||||||||||||    
T  49041157 acttggagattttctcattgaaagctaatgtgtggaaggaaattgtgggtactatccattggcctttttgtagtaag 49041081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 48147801 - 48147754
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 291  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggtttca 48147754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 48735466 - 48735419
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 291  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||    
T  48735466 tatggttttgggtatgaccatttaacagatgattacttggtggtttca 48735419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 45372156 - 45372107
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 293  Q
    ||||| ||||||||||| |||| || ||||||||||||||||||||||||    
T  45372156 tatggatttgggtatgatgagttaagagatgattacttggtggtttcagt 45372107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 48870374 - 48870427
Alignment:
Q  94 cttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttata 147  Q
    ||||| |||||||||| |||| || |||||||||||||||||||||| ||||||    
T  48870374 cttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttata 48870427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 48886060 - 48886113
Alignment:
Q  94 cttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttata 147  Q
    ||||| |||||||||| |||| || |||||||||||||||||||||| ||||||    
T  48886060 cttcctgaatcttattatgattttgaaattaaaggttcatgtagaggctttata 48886113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 48902925 - 48902982
Alignment:
Q  240 tttttatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttca 297  Q
    |||||||||||||||||||||| | |||| ||||||||||||| |||| ||| |||||    
T  48902925 tttttatggttttgggtatgaccactcaagagatgattacttgatggtatcaatttca 48902982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 49041248 - 49041199
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 293  Q
    |||||||||||||||||   ||||||||||||||||||| ||||||||||    
T  49041248 tatggttttgggtatgatccgtcaacagatgattacttgatggtttcagt 49041199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 7908325 - 7908369
Alignment:
Q  247 ggttttgggtatgacgagtcaacagatgattacttggtggtttca 291  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttca 7908369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 7237806 - 7237763
Alignment:
Q  245 atggttttgggtatgacgagtcaacagatgattacttggtggtt 288  Q
    |||||||||| |||||| |||||| |||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggtt 7237763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 7771396 - 7771439
Alignment:
Q  245 atggttttgggtatgacgagtcaacagatgattacttggtggtt 288  Q
    |||||||||| |||||| |||||| |||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggtt 7771439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 7790081 - 7790124
Alignment:
Q  245 atggttttgggtatgacgagtcaacagatgattacttggtggtt 288  Q
    |||||||||| |||||| |||||| |||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggtt 7790124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 45384952 - 45384905
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 291  Q
    |||||||||||||||||  |||||||| ||||||| ||||||||||||    
T  45384952 tatggttttgggtatgatcagtcaacaaatgattatttggtggtttca 45384905  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 50250865 - 50250818
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 291  Q
    ||||||||||| |||||| | |||||||||||||| ||||||||||||    
T  50250865 tatggttttggttatgaccactcaacagatgattatttggtggtttca 50250818  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 7877727 - 7877773
Alignment:
Q  245 atggttttgggtatgacgagtcaacagatgattacttggtggtttca 291  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttca 7877773  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 48705442 - 48705396
Alignment:
Q  245 atggttttgggtatgacgagtcaacagatgattacttggtggtttca 291  Q
    |||||||||| |||||  |||||||||||||||||||||| ||||||    
T  48705442 atggttttggatatgatcagtcaacagatgattacttggttgtttca 48705396  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 49044428 - 49044378
Alignment:
Q  105 ttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 155  Q
    ||||||| || |||||| |||| |||||||||||||||||||| |||||||    
T  49044428 ttatttttatattcaaactaaatgttcatgtagagggtttatatttttgca 49044378  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 37827217 - 37827176
Alignment:
Q  114 tcttcaaattaaaggttcatgtagagggtttataattttgca 155  Q
    ||||||||||||||||||| ||||||||||| || |||||||    
T  37827217 tcttcaaattaaaggttcaggtagagggtttgtatttttgca 37827176  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 48170646 - 48170597
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 293  Q
    |||||||||||||||||  ||| || |||||||||||| |||||||||||    
T  48170646 tatggttttgggtatgatcagttaagagatgattacttagtggtttcagt 48170597  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48852663 - 48852708
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 289  Q
    ||||||||||||||||||  |||||| |||||||||||||| ||||    
T  48852663 tatggttttgggtatgacccgtcaaccgatgattacttggtagttt 48852708  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48870539 - 48870584
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 289  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48870539 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48870584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48875843 - 48875888
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 289  Q
    |||||||||||||||||  ||| | |||||||||||||||||||||    
T  48875843 tatggttttgggtatgatcagttagcagatgattacttggtggttt 48875888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48886225 - 48886270
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 289  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48886225 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48886270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48898701 - 48898746
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 289  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48898701 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48898746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 48902778 - 48902831
Alignment:
Q  102 atcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 155  Q
    |||||||||||||||  |||||| ||||||||| ||||||||| || |||||||    
T  48902778 atcttattttgatctaaaaattataggttcatgcagagggtttgtacttttgca 48902831  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 7771222 - 7771298
Alignment:
Q  77 tgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttg 153  Q
    |||||| || |||| | ||||| ||||||||||||  | || |||||| |||||| ||||||||||||||| |||||    
T  7771222 tgaaccttaatttttcgcttccagaatcttattttcctgttgaaattagaggttcgtgtagagggtttatacttttg 7771298  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 7789907 - 7789983
Alignment:
Q  77 tgaaccctagttttccacttccggaatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttg 153  Q
    |||||| || |||| | ||||| ||||||||||||  | || |||||| |||||| ||||||||||||||| |||||    
T  7789907 tgaaccttaatttttcgcttccagaatcttattttcctgtttaaattagaggttcgtgtagagggtttatacttttg 7789983  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 45366371 - 45366327
Alignment:
Q  178 tggaatccatccaccggattttatagaaaaatacctttccctcct 222  Q
    |||||||||||||| |||||| ||| |||||||||||| ||||||    
T  45366371 tggaatccatccactggatttcataaaaaaatacctttgcctcct 45366327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 49048657 - 49048613
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtt 288  Q
    ||||||||||||||||||   |||||||||||||| |||||||||    
T  49048657 tatggttttgggtatgacccatcaacagatgattatttggtggtt 49048613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 29696203 - 29696250
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 291  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  29696203 tatggttttgggtatgacgagtcaacagatgattacttggtgatttca 29696250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 179031 - 179083
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagtttc 296  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||    
T  179031 tatggttttgggtatgaggagtcaacagatgattacttgttggtgtcaatttc 179083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 29712456 - 29712421
Alignment:
Q  314 ttttctcattgagagctaatgcgtggaacgaaattg 349  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29712456 ttttctcattgagagctgatgcgtggaacgaaattg 29712421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 29712550 - 29712504
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttc 290  Q
    |||||||||||||||||||||||||  ||||||||||| ||| ||||    
T  29712550 tatggttttgggtatgacgagtcaagggatgattacttcgtgctttc 29712504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 42562567 - 42562513
Alignment:
Q  101 aatcttattttgatcttcaaattaaaggttcatgtagagggtttataattttgca 155  Q
    |||||||||| ||| ||  |||||||||||| ||||||||||||||| |||||||    
T  42562567 aatcttatttcgatattggaattaaaggttcgtgtagagggtttatacttttgca 42562513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 11006037 - 11005988
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 293  Q
    |||||||||||||||||| | |||| |||||||||||||||||| |||||    
T  11006037 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 11005988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 11024612 - 11024563
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 293  Q
    |||||||||||||||||| | |||| |||||||||||||||||| |||||    
T  11024612 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 11024563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 47451995 - 47451946
Alignment:
Q  240 tttttatggttttgggtatgacgagtcaacagatgattacttggtggttt 289  Q
    ||||||| | |||||||||||||||| ||||||||||||||| |||||||    
T  47451995 tttttattggtttgggtatgacgagttaacagatgattacttagtggttt 47451946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 47452131 - 47452092
Alignment:
Q  113 atcttcaaattaaaggttcatgtagagggtttataatttt 152  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  47452131 atcttgaaattaaaggttcatgtagagggtttatactttt 47452092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 11015600 - 11015551
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttcagt 293  Q
    |||||||||||||||||| | | || |||||||||||||||||| |||||    
T  11015600 tatggttttgggtatgaccatttaagagatgattacttggtggtatcagt 11015551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 4031985 - 4031938
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtttca 291  Q
    |||||||||||||||||| |||||||| |||| ||| |||||||||||    
T  4031985 tatggttttgggtatgaccagtcaacaaatgactacctggtggtttca 4031938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 12200304 - 12200349
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 289  Q
    ||||||||||| ||||||  ||||| ||||||||||||||||||||    
T  12200304 tatggttttggttatgaccggtcaagagatgattacttggtggttt 12200349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 12444732 - 12444777
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggttt 289  Q
    ||||||||||| ||||||  ||||| ||||||||||||||||||||    
T  12444732 tatggttttggttatgaccggtcaagagatgattacttggtggttt 12444777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 21979722 - 21979678
Alignment:
Q  244 tatggttttgggtatgacgagtcaacagatgattacttggtggtt 288  Q
    ||||||||||| |||||| |||||| | |||||||||||||||||    
T  21979722 tatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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