View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503_low_15 (Length: 375)

Name: NF1503_low_15
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503_low_15
NF1503_low_15
[»] chr4 (2 HSPs)
chr4 (49-359)||(41107960-41108272)
chr4 (247-314)||(7600923-7600990)
[»] chr7 (7 HSPs)
chr7 (102-358)||(34913795-34914051)
chr7 (102-358)||(34906274-34906533)
chr7 (100-359)||(35702390-35702636)
chr7 (201-323)||(33032677-33032799)
chr7 (201-323)||(33120237-33120359)
chr7 (201-320)||(1470600-1470719)
chr7 (108-163)||(35725680-35725737)
[»] scaffold0036 (1 HSPs)
scaffold0036 (105-260)||(19702-19857)
[»] chr5 (6 HSPs)
chr5 (201-321)||(10101036-10101156)
chr5 (196-321)||(9678699-9678824)
chr5 (201-321)||(10104839-10104959)
chr5 (201-321)||(10214390-10214510)
chr5 (247-320)||(21036232-21036305)
chr5 (247-320)||(20982827-20982899)
[»] chr6 (2 HSPs)
chr6 (247-317)||(26384421-26384491)
chr6 (269-328)||(22366684-22366743)
[»] chr3 (1 HSPs)
chr3 (260-320)||(5130615-5130675)
[»] chr8 (2 HSPs)
chr8 (260-320)||(1086910-1086970)
chr8 (234-318)||(7224365-7224449)
[»] scaffold0011 (1 HSPs)
scaffold0011 (122-176)||(17017-17071)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 49 - 359
Target Start/End: Original strand, 41107960 - 41108272
Alignment:
Q  49 attattagcatccatgtataaaaaaccatgacnnnnnnnnnggtggt--tgtggagtctgtaagagcaccatgcgaccaccccagacagcatgtgtctga 146  Q
    ||||||||||||||||||||||||||||||||         ||| ||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  41107960 attattagcatccatgtataaaaaaccatgacaaaaaaaaaggttgtgttgttgagtctgtaagagcaccatgcgaccaccccagacagcgtgtgtctga 41108059  T
Q  147 gaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagccattaatcacgctctgatcgcatggtctttgttcatcatccagacata 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41108060 gaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagccattaatcacgctctgatcgcatggtctttgttcatcatccagacata 41108159  T
Q  247 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgactattgctccacgcgtgtgttata 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41108160 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgactattgctccacgcgtgtgttata 41108259  T
Q  347 taaacacttgagt 359  Q
    |||||||||||||    
T  41108260 taaacacttgagt 41108272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 7600990 - 7600923
Alignment:
Q  247 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaa 314  Q
    ||||| ||| ||| ||||||||||||||||| | |||| | ||||||||||| ||||||| |||||||    
T  7600990 tgttcatgtttccctagaaatcaaggacacaattgtacaagcctatagaacaaatcctgtccaagtaa 7600923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 102 - 358
Target Start/End: Original strand, 34913795 - 34914051
Alignment:
Q  102 gtctgtaagagcaccatgcgaccaccccagacagcatgtgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagccat 201  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |    
T  34913795 gtctgtaagagcaccgtgcaaccaccccagacaacatgtgtctgagaacgatcatctacagcacaagatgatgtctcaacatgagaatcatctaagccgt 34913894  T
Q  202 taatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagat 301  Q
    ||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34913895 taatcacgctctgatcgcacggtcttcattcatcatccagacgtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagat 34913994  T
Q  302 cctgttcaagtaaggtcgtgactattgctccacgcgtgtgttatataaacacttgag 358  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||    
T  34913995 cctgttcaagtaaggtcgtgacaattgttccacgtgtgtgttatataaacacttgag 34914051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 102 - 358
Target Start/End: Complemental strand, 34906533 - 34906274
Alignment:
Q  102 gtctgtaagagcaccatgcgaccaccccagaca---gcatgtgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagc 198  Q
    ||||||||||||||| ||| |||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  34906533 gtctgtaagagcaccgtgcaaccaccccagacacatgcatgtgtctgagaacgatcatctacagcacaagatgatgtctcaacatgagaatcatctaagc 34906434  T
Q  199 cattaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaaca 298  Q
    | |||||||||||||||||||| ||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34906433 cgttaatcacgctctgatcgcacggtcttcattcatcatccagacgtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaaca 34906334  T
Q  299 gatcctgttcaagtaaggtcgtgactattgctccacgcgtgtgttatataaacacttgag 358  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||    
T  34906333 gatcctgttcaagtaaggtcgtgacaattgttccacgtgtgtgttatataaacacttgag 34906274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 100 - 359
Target Start/End: Complemental strand, 35702636 - 35702390
Alignment:
Q  100 gagtctgtaagagcaccatgcgaccaccccagacagcatgtgtctgagaacgatcatctacagcacaa---gattatgtctcaacatg---agaatcatc 193  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||   ||| |||||||||||||   |||||||||    
T  35702636 gagtctgtaagaacaccatgcaaccaccccagacagcgtgtgtctgagaacgatcatctacagcacaagatgatgatgtctcaacatgagaagaatcatc 35702537  T
Q  194 tcagccattaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctata 293  Q
    |||||| |||||||||||||||||||| |||  |  ||||||||||     ||              ||| |||||  ||||||||||||| ||||||||    
T  35702536 tcagccgttaatcacgctctgatcgcacggttgtctttcatcatcc-----ta--------------taggaatcatagacacagtagtaccatcctata 35702456  T
Q  294 gaacagatcctgttcaagtaaggtcgtgactattgctccacgcgtgtgttatataaacacttgagt 359  Q
    |||||||||||||||||||||||||||||| | || | |||||||||| |||||||||| ||||||    
T  35702455 gaacagatcctgttcaagtaaggtcgtgaccaatgattcacgcgtgtgctatataaacatttgagt 35702390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 33032677 - 33032799
Alignment:
Q  201 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 300  Q
    ||||||||||||||||| || ||||     || |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032677 ttaatcacgctctgatcacacggtcacaaatcctcatccagatttatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 33032776  T
Q  301 tcctgttcaagtaaggtcgtgac 323  Q
    |||||||||||||||||||||||    
T  33032777 tcctgttcaagtaaggtcgtgac 33032799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 33120237 - 33120359
Alignment:
Q  201 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 300  Q
    ||||||||||||||||| || ||||     || |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33120237 ttaatcacgctctgatcacacggtcacaaatcctcatccagatttatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 33120336  T
Q  301 tcctgttcaagtaaggtcgtgac 323  Q
    |||||||||||||||||||||||    
T  33120337 tcctgttcaagtaaggtcgtgac 33120359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 201 - 320
Target Start/End: Original strand, 1470600 - 1470719
Alignment:
Q  201 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 300  Q
    ||||||| ||||||||| || |||| | |||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1470600 ttaatcatgctctgatcacacggtcatggttcatccaccagacgtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaataga 1470699  T
Q  301 tcctgttcaagtaaggtcgt 320  Q
    || |||||||||||||||||    
T  1470700 tcatgttcaagtaaggtcgt 1470719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 35725737 - 35725680
Alignment:
Q  108 aagagcaccatgcgaccaccccagacagcatgtgt--ctgagaacgatcatctacagc 163  Q
    |||| |||| ||| ||||||||||||||| |||||  |||||||||||||||||||||    
T  35725737 aagaacaccgtgcaaccaccccagacagcgtgtgtgtctgagaacgatcatctacagc 35725680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 19857 - 19702
Alignment:
Q  105 tgtaagagcaccatgcgaccaccccagacagcatgtgtctgagaacgatcatctacagcacaagattatgtctcaacatgagaatcatctcagccattaa 204  Q
    |||||||||||| |||| |||||||||| ||| | |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  19857 tgtaagagcaccgtgcggccaccccagatagcgtttgtctgagaacgattatctacagcacaagatgatgtcttaacatgagaatcatctcagccgttaa 19758  T
Q  205 tcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctcct 260  Q
    ||||||||||||| || |||||| |||||||||| |||||||||||||||||||||    
T  19757 tcacgctctgatctcacggtcttcgttcatcatctagacatatgttcctgtctcct 19702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 201 - 321
Target Start/End: Original strand, 10101036 - 10101156
Alignment:
Q  201 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 300  Q
    ||||||||||||||||| || |||| | |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10101036 ttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 10101135  T
Q  301 tcctgttcaagtaaggtcgtg 321  Q
    |||||||||||||||||||||    
T  10101136 tcctgttcaagtaaggtcgtg 10101156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 196 - 321
Target Start/End: Complemental strand, 9678824 - 9678699
Alignment:
Q  196 agccattaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctataga 295  Q
    |||| ||||||||||||||||| ||  ||| |  ||||||  |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9678824 agccgttaatcacgctctgatcacacagtcatgattcatccaccagacgtatgttcctgtctcctttgaaatcaaggacacagtagtacgatcctataga 9678725  T
Q  296 acagatcctgttcaagtaaggtcgtg 321  Q
    ||||||||||||||||||||||||||    
T  9678724 acagatcctgttcaagtaaggtcgtg 9678699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 321
Target Start/End: Original strand, 10104839 - 10104959
Alignment:
Q  201 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 300  Q
    ||||||||||||||||| || |||| | |||||||  |||||| |||| |||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  10104839 ttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgctcctgtcttcttagaaatcaaggacacagtagtataatcctatagaacaga 10104938  T
Q  301 tcctgttcaagtaaggtcgtg 321  Q
    |||||||||||||||||||||    
T  10104939 tcctgttcaagtaaggtcgtg 10104959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 10214510 - 10214390
Alignment:
Q  201 ttaatcacgctctgatcgcatggtctttgttcatcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacaga 300  Q
    ||||||||||||||||| || ||||     |||||  |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  10214510 ttaatcacgctctgatcacacggtcacaactcatctaccagacatatgttcctatctccttagaaatcaaggacacagtagtacaatcctatagaacaga 10214411  T
Q  301 tcctgttcaagtaaggtcgtg 321  Q
    |||||||||||||||||||||    
T  10214410 tcctgttcaagtaaggtcgtg 10214390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 21036232 - 21036305
Alignment:
Q  247 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 320  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21036232 tgtttctgtttccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 21036305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 20982827 - 20982899
Alignment:
Q  247 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 320  Q
    ||||| || |||||||||||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||||    
T  20982827 tgttcgtgcctccttagaaatcaaggatacaatagtacgatcctatagatcagatcctgttc-agtaaggtcgt 20982899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 26384491 - 26384421
Alignment:
Q  247 tgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggt 317  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26384491 tgtttctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggt 26384421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 22366743 - 22366684
Alignment:
Q  269 aaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgactattg 328  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22366743 aaggacacagtagtacgatcctatagaacagatcctgttcaaataaggtcgtgactattg 22366684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 5130675 - 5130615
Alignment:
Q  260 ttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 320  Q
    ||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||    
T  5130675 ttagaaatcaaggacacagtaatacgatcctataaaagagatcttgttcaagtaaggtcgt 5130615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 1086910 - 1086970
Alignment:
Q  260 ttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 320  Q
    |||||||||||||||||| |||||||||| |||| || ||||| |||||||||||||||||    
T  1086910 ttagaaatcaaggacacaatagtacgatcttataaaatagatcttgttcaagtaaggtcgt 1086970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 7224449 - 7224365
Alignment:
Q  234 tcatccagacatatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtc 318  Q
    |||||||||  ||||||| |||||||||||||||||||||| || |  ||||||||||||||||| ||| | || ||||||||||    
T  7224449 tcatccagatttatgttcatgtctccttagaaatcaaggacgcaatgttacgatcctatagaacaaatcatatttaagtaaggtc 7224365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 17071 - 17017
Alignment:
Q  122 accaccccagacagcatgtgtctgagaacgatcatctacagcacaagattatgtc 176  Q
    |||||||| ||||| ||||||||||||||||||||| |||| ||||||| |||||    
T  17071 accacccccgacagtatgtgtctgagaacgatcatccacagtacaagatgatgtc 17017  T

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