View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503_low_16 (Length: 371)

Name: NF1503_low_16
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503_low_16
NF1503_low_16
[»] chr8 (3 HSPs)
chr8 (12-371)||(10189996-10190358)
chr8 (46-135)||(37517579-37517668)
chr8 (46-135)||(500717-500806)
[»] chr4 (1 HSPs)
chr4 (46-135)||(53170988-53171077)
[»] chr2 (7 HSPs)
chr2 (46-132)||(4412597-4412683)
chr2 (45-145)||(19161344-19161444)
chr2 (46-111)||(9684967-9685032)
chr2 (46-111)||(18744570-18744635)
chr2 (46-111)||(41867460-41867525)
chr2 (46-135)||(17345128-17345217)
chr2 (46-135)||(20142268-20142357)
[»] chr3 (3 HSPs)
chr3 (46-135)||(53786198-53786287)
chr3 (52-123)||(52411442-52411513)
chr3 (53-146)||(49018449-49018542)
[»] chr1 (3 HSPs)
chr1 (56-125)||(7794453-7794522)
chr1 (54-135)||(37200753-37200834)
chr1 (54-111)||(19035925-19035982)
[»] chr7 (1 HSPs)
chr7 (82-149)||(47679647-47679714)
[»] chr6 (1 HSPs)
chr6 (59-149)||(23910804-23910894)
[»] chr5 (2 HSPs)
chr5 (28-148)||(3113681-3113804)
chr5 (46-111)||(15291575-15291640)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 371
Target Start/End: Original strand, 10189996 - 10190358
Alignment:
Q  12 caatatgaaataatataatcataatgcaatatctg---atattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaag 108  Q
    ||||||||||||||| ||||||||  |||||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10189996 caatatgaaataatagaatcataagacaatatctgcagatattacgatactccactgatgatatatgcttacctaactcatcaacaaggatagttagaag 10190095  T
Q  109 aaagtcatgaacatgtgttacttgcaagcagcctaaaactgattagatgtctaaaggtcatgttaaatttaacttttatatctgaaacaatgttcctaaa 208  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||| || ||| |||||||| ||| ||||||| ||||||| ||||||| ||||||||    
T  10190096 aaaatcatgaacatgtgttacttgcaagcaccctaaaactgattagacgtttaatggtcatgtcaaacttaacttctatatcttaaacaattttcctaaa 10190195  T
Q  209 gagggaaattgtgaaaacatattgtattttaggaaagacgatgtcattgtaggtaaatctcaaaatccagaatcaccccacaatgaccatccaaaacata 308  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10190196 gagggaaattgtgaaaacatattgtactttaggaaagacgatgtcattgtaggtaaatctcaaaatccagaatcacaccacaatgaccatccaaaacata 10190295  T
Q  309 aggagacacaaaatcatacgaggtaagagagcaccacaaacatcgttcaaatttactatgaaa 371  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10190296 aggagacacaaactcatacgaggtaagagagcaccacaaacatcgttcaaatttactatgaaa 10190358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 37517579 - 37517668
Alignment:
Q  46 gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa 135  Q
    ||||||| |||||||||||| ||| ||||| | ||||||| |||||||  ||||| |||||||||| |||||| |||||| | |||||||    
T  37517579 gatattatgatactccactggtgacatatgttgacctaacccatcaatcgggatacttagaagaaaatcatgagcatgtgctgcttgcaa 37517668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 500717 - 500806
Alignment:
Q  46 gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa 135  Q
    |||| |||| ||||||| || ||| ||||||| ||||||||||||||| ||||| | ||||||||| |||||| ||| || | |||||||    
T  500717 gatagtacggtactccattggtgacatatgctgacctaactcatcaatcaggattgctagaagaaaatcatgagcatatgctgcttgcaa 500806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 53170988 - 53171077
Alignment:
Q  46 gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa 135  Q
    |||| ||||||||||||||||||||||||||| | ||||| ||||||| ||||||| ||||||||| || ||| |||||| | |||||||    
T  53170988 gatagtacgatactccactgatgatatatgctgaactaacccatcaattaggatagctagaagaaaatcctgagcatgtgctgcttgcaa 53171077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 4412683 - 4412597
Alignment:
Q  46 gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttg 132  Q
    |||| ||||||||||||||| ||| ||||||| |||||||||||||||  |||||| ||||||||| || ||| |||||||| ||||    
T  4412683 gatagtacgatactccactggtgacatatgctgacctaactcatcaatcgggatagctagaagaaaatcctgagcatgtgttgcttg 4412597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 19161444 - 19161344
Alignment:
Q  45 tgatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaa 144  Q
    ||||| ||||||||||||||||||| ||||||| |||||||  |||||| ||||||| ||||||||| || ||| ||| | || ||||||| || |||||    
T  19161444 tgatagtacgatactccactgatgacatatgctgacctaacctatcaatcaggatagctagaagaaaatcctgagcatatattgcttgcaaacatcctaa 19161345  T
Q  145 a 145  Q
    |    
T  19161344 a 19161344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 9685032 - 9684967
Alignment:
Q  46 gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa 111  Q
    |||| ||||||||||||||| ||| ||||||| ||||||| |||||||| |||||| |||||||||    
T  9685032 gatagtacgatactccactggtgacatatgctgacctaacccatcaatagggatagctagaagaaa 9684967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 18744635 - 18744570
Alignment:
Q  46 gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa 111  Q
    |||| ||||||||||||||| ||| ||||||| ||||||| |||||||  |||||| |||||||||    
T  18744635 gatagtacgatactccactggtgacatatgctaacctaacccatcaatcgggatagctagaagaaa 18744570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 41867525 - 41867460
Alignment:
Q  46 gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa 111  Q
    |||| ||||||||||||||| ||| ||||||| ||||||| |||||||  |||||| |||||||||    
T  41867525 gatagtacgatactccactggtgacatatgctgacctaacccatcaatcgggatagctagaagaaa 41867460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 17345128 - 17345217
Alignment:
Q  46 gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa 135  Q
    |||| ||||||||||||||  ||| ||||||  ||||||| |||||||  |||||| ||||||||| || ||| |||||| | |||||||    
T  17345128 gatagtacgatactccactagtgacatatgccgacctaacccatcaattgggatagctagaagaaaatcttgagcatgtggttcttgcaa 17345217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 20142357 - 20142268
Alignment:
Q  46 gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa 135  Q
    |||| ||| ||||||||||| ||| ||||||| || |||| |||||||  |||||| ||||||||| || ||| |||||| | |||||||    
T  20142357 gatagtacaatactccactgttgacatatgctgacttaacccatcaatcgggatagctagaagaaaatcctgagcatgtgctgcttgcaa 20142268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 53786198 - 53786287
Alignment:
Q  46 gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa 135  Q
    |||| ||||||||||||||| ||| ||||||| ||||||| ||||||| || |||| ||||||||| || ||| |||||| | |||||||    
T  53786198 gataatacgatactccactggtgacatatgctgacctaacccatcaatcagaatagctagaagaaaatcttgagcatgtggtgcttgcaa 53786287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 52411513 - 52411442
Alignment:
Q  52 acgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatg 123  Q
    |||||||||||||  ||| ||||||| || ||||||||||||  |||||| ||||||||| |||||| ||||    
T  52411513 acgatactccactcgtgacatatgctgacttaactcatcaatcgggatagctagaagaaaatcatgagcatg 52411442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 49018449 - 49018542
Alignment:
Q  53 cgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaaaa 146  Q
    ||||||||||||  ||| ||  ||| ||||||| ||||||| ||||||| ||||||||| |||||| |||||  | ||||||| || |||||||    
T  49018449 cgatactccacttgtgacatgcgctgacctaacccatcaatcaggatagctagaagaaaatcatgagcatgtactgcttgcaaacatcctaaaa 49018542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 7794522 - 7794453
Alignment:
Q  56 tactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtg 125  Q
    |||||||||| ||||||||| | ||||||| ||||||||||||||| || |||||| |||||| ||||||    
T  7794522 tactccactggtgatatatgttgacctaacccatcaataaggatagctataagaaaatcatgagcatgtg 7794453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 37200753 - 37200834
Alignment:
Q  54 gatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaa 135  Q
    |||||||||||  ||| ||||||| ||||||| |||| ||| ||||||||| |||||| | |||| |||||| |||||||||    
T  37200753 gatactccactagtgacatatgctgacctaacccatccatatggatagttaaaagaaaatgatgagcatgtgctacttgcaa 37200834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 19035925 - 19035982
Alignment:
Q  54 gatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa 111  Q
    |||||||||||| ||| ||||| | |||||||||||||||  |||||| |||||||||    
T  19035925 gatactccactggtgacatatgttgacctaactcatcaatcgggatagctagaagaaa 19035982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 47679647 - 47679714
Alignment:
Q  82 taactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaaaactg 149  Q
    |||||||||||| ||||||| ||||||||| || ||| |||||| ||||||||| || ||||||||||    
T  47679647 taactcatcaatcaggatagctagaagaaaatcctgagcatgtgctacttgcaaacatcctaaaactg 47679714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 23910894 - 23910804
Alignment:
Q  59 tccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgtgttacttgcaagcagcctaaaactg 149  Q
    ||||||| ||| ||||||| |||||||||||||||  |||||||||||| ||| |  | |||||||||| ||||||| || ||| ||||||    
T  23910894 tccactggtgacatatgctaacctaactcatcaattgggatagttagaaaaaaattctaaacatgtgttgcttgcaaacaccctcaaactg 23910804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 3113804 - 3113681
Alignment:
Q  28 aatcataatgcaatatct---gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaagtcatgaacatgt 124  Q
    |||||||| |||||||||   |||| |||||||||||||| ||||  |||||| |||||| ||||||||  |||||| ||| ||||| || ||| |||||    
T  3113804 aatcataaggcaatatctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggagaaaatcttgagcatgt 3113705  T
Q  125 gttacttgcaagcagcctaaaact 148  Q
    | | ||| ||| || |||||||||    
T  3113704 gctgcttccaaacaccctaaaact 3113681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 15291640 - 15291575
Alignment:
Q  46 gatattacgatactccactgatgatatatgcttacctaactcatcaataaggatagttagaagaaa 111  Q
    |||| ||||||||||||||| ||| ||||||| ||||||| |||||||  |||||| |||||||||    
T  15291640 gatagtacgatactccactggtgacatatgctgacctaacccatcaattgggatagctagaagaaa 15291575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 16276 times since January 2019
Visitors: 3768