View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1503_low_20 (Length: 337)
Name: NF1503_low_20
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_low_20 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 8314301 - 8314624
Alignment:
| Q |
11 |
cataggcaacaatgtatccacaatcattagaattttaacattatcttgttcaaaaagaacttcaacattacattacaacttcaacactgtcacaactcaa |
110 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
8314301 |
cataggaaacaatgtatccacaatcatta-aattttaacattatcttgatcaaaaagaacttcaacattacattacaacttcaacattgtcacaaatcaa |
8314399 |
T |
|
| Q |
111 |
aacgaacttcaacattacat--------------tacatcagaccttcaacattaaaatcacaaccaaaaggaacattacaatcaatcctaaacatacaa |
196 |
Q |
| |
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|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8314400 |
aaagaacttcaacattacattacatcttaaacattacatcagaccttcaacattaaaatcacaaccacaaggaacattacaatcaatcctaaacatacaa |
8314499 |
T |
|
| Q |
197 |
ctcctctaacaatttttctgttcattttttctggtgaatcatttttcctcaacaaagcatttataagtctctcctctctttcagaacaagcttcatcgta |
296 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
8314500 |
ctcctttaacaatttttctgttcattttttccagtgaatcatttttcctcaacaaagcatttataagtttcttctctctttcagaacaagcttcatcgta |
8314599 |
T |
|
| Q |
297 |
ccatttgaagaagttacgaaatcaa |
321 |
Q |
| |
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||||||||||||||||| ||||||| |
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| T |
8314600 |
ccatttgaagaagttacaaaatcaa |
8314624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 59 - 321
Target Start/End: Original strand, 39691252 - 39691528
Alignment:
| Q |
59 |
ttcaaaaagaacttcaacattacattacaacttcaacactgtcacaactcaaaacgaacttcaacattacat--------------tacatcagaccttc |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
39691252 |
ttcaaaaagaacttcaacattacattacaacttcaacattgtcacaactcaaaaagaacttcaacattacattacatcttaaacattacatcagaccttc |
39691351 |
T |
|
| Q |
145 |
aacattaaaatcacaaccaaaaggaacattacaatcaatcctaaacatacaactcctctaacaatttttctgttcattttttctggtgaatcatttttcc |
244 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39691352 |
aacattaaaatcacaaccataaggaacattacaatcaatcctaaacatacaactcctctaacaatttttctgttcattttttccagtgaatcatttttcc |
39691451 |
T |
|
| Q |
245 |
tcaacaaagcatttataagtctctcctctctttcagaacaagcttcatcgtaccatttgaagaagttacgaaatcaa |
321 |
Q |
| |
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|||||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
39691452 |
tcaacaaagcatttataagtttcttctctctttaagaacaagattcatcgtaccatttgaagaagttacaaaatcaa |
39691528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 39691088 - 39691210
Alignment:
| Q |
21 |
aatgtatccacaatcattagaattttaacattatcttg--------ttcaaaaagaacttcaacattacattacaacttcaacactgtcacaactcaaaa |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
39691088 |
aatgtatccacaatcatta-aattttaacattatcttactcaatccttcaaaaagaacttcaacatcacattacaacttcaacattggcacaactcaaaa |
39691186 |
T |
|
| Q |
113 |
cgaacttcaacattacattacatc |
136 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
39691187 |
agaacttcaacattacattacatc |
39691210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 39691181 - 39691217
Alignment:
| Q |
60 |
tcaaaaagaacttcaacattacattacaacttcaaca |
96 |
Q |
| |
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|||||||||||||||||||||||||||| ||| |||| |
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| T |
39691181 |
tcaaaaagaacttcaacattacattacatcttaaaca |
39691217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 15443083 - 15443387
Alignment:
| Q |
21 |
aatgtatccacaatcattagaattttaacattatcttg--------ttcaaaaagaacttcaacattacattacaacttcaacactgtcacaactcaaaa |
112 |
Q |
| |
|
||||||||||| ||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
15443083 |
aatgtatccacgatcatta-acttttaacattatcttgctcaatccttcaaaaagaacttcaacattacattacaacttcaacattgtcacaactcaaaa |
15443181 |
T |
|
| Q |
113 |
cgaacttcaacattacattacatc--------------agaccttcaacattaaaatcacaaccaaaaggaacattacaatcaatcctaaacatacaact |
198 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15443182 |
agaacttcaacattacattgcatcttaaacattacatgagaccttcaacattgaaatcacaaccacaaggaacattacaatcaatcctaaacatacaact |
15443281 |
T |
|
| Q |
199 |
cctctaacaatttttctgttcattttttctggtgaatcatttttcctcaacaaagcatttataagtctctcctctctttcagaacaagcttcatcgtacc |
298 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| ||||||||| | ||| |||| |||||||||||||||||||||||| |
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| T |
15443282 |
cctctaacaatttttctgttcatttttt-----------------ctcaacaaaacatttataattttcttctctttttcagaacaagcttcatcgtacc |
15443364 |
T |
|
| Q |
299 |
atttgaagaagttacgaaatcaa |
321 |
Q |
| |
|
||||||||||||||| ||||||| |
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|
| T |
15443365 |
atttgaagaagttacaaaatcaa |
15443387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 143 - 313
Target Start/End: Original strand, 5379201 - 5379371
Alignment:
| Q |
143 |
tcaacattaaaatcacaaccaaaaggaacattacaatcaatcctaaacatacaactcctctaacaatttttctgttcattttttctggtgaatcattttt |
242 |
Q |
| |
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||||||||| |||||||| ||| |||||||||||||||| ||||||||||||| |||| |||||| ||| ||||| || | || |||| ||||| |
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| T |
5379201 |
tcaacattacaatcacaatcaactggaacattacaatcaaacctaaacatacaattcctataacaagtttgttgttcgaattctgcagtaaatcgttttt |
5379300 |
T |
|
| Q |
243 |
cctcaacaaagcatttataagtctctcctctctttcagaacaagcttcatcgtaccatttgaagaagttac |
313 |
Q |
| |
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| ||| || |||||| ||||| ||| |||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
5379301 |
cttcagcagagcattgataagcttcttctctctctcagaacatgcttcatcgtaccatttgaagaagttac |
5379371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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