View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_low_21 (Length: 331)
Name: NF1503_low_21
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 71 - 314
Target Start/End: Complemental strand, 31806554 - 31806310
Alignment:
| Q |
71 |
ctattctttatttttt-aacaaatagagtcataatactaccatttaatggaaaatctgtggaaatattaattcatataaaacatttgaaacctaaagtat |
169 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31806554 |
ctattctttatttttttaacaaatagagtcataatactaccatttaatggaaaatctgtggaaatattaattcatataaaacatttgaaacctaaaatat |
31806455 |
T |
|
| Q |
170 |
gaattttgcataaattaaaagtgagatactaaggtaggaaacgaattgagaaaaataaggattaaaggggtgtgaataaaagttaaagtgaatgaagaag |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
31806454 |
gaattttgcataaattaaaagtgagatactaaggtaggaaacaaattgagaaaaataaggattaaaggggtgtgtataaaagttacagtgaatgaagaag |
31806355 |
T |
|
| Q |
270 |
agtacaagtacgtaccagctcagtgatgaagtttggcggcagtga |
314 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31806354 |
agtgcaagtacgtaccagctcagtgatgaagtttggcggcagtga |
31806310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 31806592 - 31806556
Alignment:
| Q |
18 |
ctagcttatccgctattacctataagctaacttatca |
54 |
Q |
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| T |
31806592 |
ctagcttatccgctattacttataagctaacttatca |
31806556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 25290037 - 25289916
Alignment:
| Q |
128 |
tggaaatattaattcatataaaacatttgaaacctaaagtatgaattttgcataaattaaaagtgagatactaaggtaggaaacgaattgagaaaaataa |
227 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||| ||||||| ||| ||||| |||||||| |||||| |
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| T |
25290037 |
tggaaatattaattcaaatcaaacatttgaaacctaaagtatgaattttccaaaaattaaaagtgaaatactaaagtatgaaacaaattgagagaaataa |
25289938 |
T |
|
| Q |
228 |
ggattaaaggggtgtgaataaa |
249 |
Q |
| |
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|||||||| |||| || ||||| |
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| T |
25289937 |
ggattaaatgggtttgtataaa |
25289916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 25289688 - 25289619
Alignment:
| Q |
245 |
ataaaagttaaagtgaatgaagaagagtacaagtacgtaccagctcagtgatgaagtttggcggcagtga |
314 |
Q |
| |
|
|||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25289688 |
ataaaaattaaagtgaatgaagaaaagtgcaagtacgtaccagctcagtgatgaagtttggcggcagtga |
25289619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 25290083 - 25290032
Alignment:
| Q |
71 |
ctattctttattttttaacaaatagagtcataatactaccatttaatggaaa |
122 |
Q |
| |
|
|||||| ||||||| || | ||||||| |||||||||||||||||||||||| |
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|
| T |
25290083 |
ctattcgttattttctaccgaatagagccataatactaccatttaatggaaa |
25290032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 32326010 - 32325963
Alignment:
| Q |
17 |
actagcttatccgctattacctataagctaacttatcagctatccact |
64 |
Q |
| |
|
|||||||||||| |||||| |||||||||| |||||||||||| |||| |
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|
| T |
32326010 |
actagcttatccactattagctataagctagcttatcagctattcact |
32325963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 20988682 - 20988637
Alignment:
| Q |
23 |
ttatccgctattacctataagctaacttatcagctatccactataa |
68 |
Q |
| |
|
|||||||| |||||||||||| || ||||| ||||||||||||||| |
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|
| T |
20988682 |
ttatccgcaattacctataagttagcttattagctatccactataa |
20988637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 42967988 - 42968036
Alignment:
| Q |
18 |
ctagcttatccgctattacctataagctaacttatcagctatccactat |
66 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| || || |||||| |
|
|
| T |
42967988 |
ctagcttatctgctatcacctataagctaacttatcggccattcactat |
42968036 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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