View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1503_low_22 (Length: 330)
Name: NF1503_low_22
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_low_22 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr3 (18 HSPs) |
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|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 36 - 330
Target Start/End: Complemental strand, 26354454 - 26354160
Alignment:
| Q |
36 |
tctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattg |
135 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
26354454 |
tctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctagatttaatgagactaaattcattg |
26354355 |
T |
|
| Q |
136 |
cttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggag |
235 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354354 |
cttggaaaaactattgtaggcttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggag |
26354255 |
T |
|
| Q |
236 |
gcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaa |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26354254 |
gcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaa |
26354160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 36 - 330
Target Start/End: Original strand, 9815625 - 9815919
Alignment:
| Q |
36 |
tctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattg |
135 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| || ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| | |||| | |
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|
| T |
9815625 |
tctatagagcagtatttgccacatagagttgctatgcaatttgaaatggatcaagatgttccaacttatgtgcctagattcaatgagactaaactcatgg |
9815724 |
T |
|
| Q |
136 |
cttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggag |
235 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| | |||||||||| ||||||||||||| |||||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
9815725 |
cttggaaaaactattgtaggcttatatctgatcaaaatttgtattttccaccaagactttttgaggcagatgttaccacacgatatacaatgtggtggaa |
9815824 |
T |
|
| Q |
236 |
gcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaa |
330 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| |||| |||||||| ||||| ||||||| ||||||| |
|
|
| T |
9815825 |
gcaatcggtattgggtcatgtcgattttgttcagaacattgtgaagcggaagagaagtcaaagttcaaggaagtacagatctcatgtaggaaaaa |
9815919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 38435116 - 38434911
Alignment:
| Q |
36 |
tctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattg |
135 |
Q |
| |
|
||||| || |||||||| |||||||||| || || |||| ||||| ||||||||||||||||||||||||| ||| || |||||||||| || |||| |
|
|
| T |
38435116 |
tctattgaacaatatctaccacatagagatgctatgtaatttagaattgatcaagatgttccaagttatgtgcttaggttaaatgagactaaatcaattg |
38435017 |
T |
|
| Q |
136 |
cttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggag |
235 |
Q |
| |
|
||| ||||||||| | || || |||||||||| | |||||||||| ||||||||| | | |||||||||||| |||| |||||||||| |||||||| |
|
|
| T |
38435016 |
cttagaaaaactaccgcagtctcatatttgataaaaatttgtattttccaccaagattatttgaggcagatgttaccaagcgttatgcaaggtggtggaa |
38434917 |
T |
|
| Q |
236 |
gcaatc |
241 |
Q |
| |
|
|||||| |
|
|
| T |
38434916 |
gcaatc |
38434911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 36 - 330
Target Start/End: Complemental strand, 20015728 - 20015434
Alignment:
| Q |
36 |
tctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattg |
135 |
Q |
| |
|
||||| ||||| ||| | ||||| ||||| || ||||||| |||||||||||||||||||| || |||||||||||||||||||||||| | ||| || |
|
|
| T |
20015728 |
tctatagagcagtatttgccacacagagttgctatgcaatttggaatggatcaagatgttccaggtgatgtgcctagattcaatgagactaaaatcactg |
20015629 |
T |
|
| Q |
136 |
cttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggag |
235 |
Q |
| |
|
|||||||| | |||||||| ||||||| ||||| | | |||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20015628 |
cttggaaatattattgtaggcttatatctgataaaaacttgtattttccaccaagactctttgaggcagatgtagccacacgttatgcaatgtggtggaa |
20015529 |
T |
|
| Q |
236 |
gcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgttggaaaaa |
330 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||| | ||||||| |
|
|
| T |
20015528 |
gcaatcggtattgggtcacagagattttgttaagaacattgtgaagcggaagagaagtgaaagttcaaggaaacatagacctcatctaggaaaaa |
20015434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 91 - 322
Target Start/End: Complemental strand, 20007744 - 20007513
Alignment:
| Q |
91 |
atgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaag |
190 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||| ||||||||||||||| ||||||| ||| ||||||| ||||| | |||||||||| |||||||| |
|
|
| T |
20007744 |
atgttccaactaatgtgcctaggttcaatgagactaaattcattgcttggaagaactattttaggcttatatctgataaaaatttgtattttccaccaag |
20007645 |
T |
|
| Q |
191 |
actttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagaga |
290 |
Q |
| |
|
| || |||||||| |||| |||||| ||||||| |||||||| |||| |||||||||||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
20007644 |
atattttgaggcagctgtacgcacacgatatgcaaagtggtggaagcaagtggtattgggtcatggcgattttgttaagaacgttgtgaagcggaagaga |
20007545 |
T |
|
| Q |
291 |
agtgaaagctcaaggaaacacagagctcatgt |
322 |
Q |
| |
|
|||| || ||||||| ||| ||| ||||||| |
|
|
| T |
20007544 |
agtgcaatttcaaggagacatagatctcatgt |
20007513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 35 - 322
Target Start/End: Original strand, 26653738 - 26654025
Alignment:
| Q |
35 |
gtctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcatt |
134 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| || ||||||| |||| || ||||||||||||||||||||| |||| ||||||||||||| || |||| |
|
|
| T |
26653738 |
gtctattgagcaatatcttccacatagagttgctatgcaatttggaattgaccaagatgttccaagttatgtggctaggttcaatgagactaaatacatt |
26653837 |
T |
|
| Q |
135 |
gcttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtgga |
234 |
Q |
| |
|
|||||| ||||||| || || | ||| | | ||| | |||||||||| |||||||| | | |||||||||||| | || |||||||||| |||||||| |
|
|
| T |
26653838 |
gcttgggaaaactactgcaggcctatttcttataaaaatttgtattttccaccaaggttgtttgaggcagatgtcatcatgcgttatgcaaagtggtgga |
26653937 |
T |
|
| Q |
235 |
ggcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtgaaagctcaaggaaacacagagctcatgt |
322 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
26653938 |
agcaactggtattgggtcatggagattttgttaagaacattgtgaaacggaagagaagtgtgagttcaaggaaacctagagctcatgt |
26654025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 35 - 247
Target Start/End: Original strand, 19838983 - 19839195
Alignment:
| Q |
35 |
gtctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcatt |
134 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| |||||||| |||| ||||||| ||||| || |||| |
|
|
| T |
19838983 |
gtctatagagcaatatcttccacatagagttgctatgcaattcggaatggatcaagatgttccaggttatgtggctaggttcaatgtgactaaatacatt |
19839082 |
T |
|
| Q |
135 |
gcttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtgga |
234 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||| | | |||||||| ||||||||| | | |||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
19839083 |
gcttggaaaaactattgcagacccatatatgataaaaacttgtattttccaccaagattatttgaggcagatgttaccatacgttatgcaaggtggtgga |
19839182 |
T |
|
| Q |
235 |
ggcaatcaatatt |
247 |
Q |
| |
|
|||||| |||| |
|
|
| T |
19839183 |
tacaatcagtatt |
19839195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 48 - 315
Target Start/End: Original strand, 26647607 - 26647874
Alignment:
| Q |
48 |
tatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaact |
147 |
Q |
| |
|
||||| ||||||||||| || ||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
26647607 |
tatctgccacatagagttgctatgcaatttggaatggatcaagatgttccgagtgatgtgcctcgattcaatgagactaaagacattgcttggaaaaact |
26647706 |
T |
|
| Q |
148 |
attgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatatt |
247 |
Q |
| |
|
| ||||||| |||| ||||| ||||||||||||| | ||| ||| |||||||||||| || || |||||||||| |||||||| |||||| |||| |
|
|
| T |
26647707 |
actgtagacgcatatctgataggagtttgtatttcccatcgagattttttgaggcagatgttactacccgttatgcaaggtggtggaaacaatcagtatt |
26647806 |
T |
|
| Q |
248 |
gggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtgaaagctcaaggaaacacagag |
315 |
Q |
| |
|
||||| || |||||||||| || |||||| || ||| |||||| ||| ||||||||||| |||| |
|
|
| T |
26647807 |
gggtcgtgatgattttgttatgaaaattgtgcagaagaaacgaagtgcaagttcaaggaaacatagag |
26647874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 35 - 247
Target Start/End: Original strand, 19956674 - 19956886
Alignment:
| Q |
35 |
gtctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcatt |
134 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| || ||||||| |||| |||||||||||||| ||||||| |||| ||||||||||||| || |||| |
|
|
| T |
19956674 |
gtctatagagcaatatcttccacatagagttgctatgcaatttggaattgatcaagatgttccgggttatgtagctaggttcaatgagactaaatacatt |
19956773 |
T |
|
| Q |
135 |
gcttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtgga |
234 |
Q |
| |
|
|||||||||||||| || |||| |||| ||||| | | |||||||| ||||||||| | | |||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
19956774 |
gcttggaaaaactactgcagacccatatatgataaaaacttgtattttccaccaagattatttgaggcagatgttaccacacgttatgcaaggtggtggg |
19956873 |
T |
|
| Q |
235 |
ggcaatcaatatt |
247 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19956874 |
tgcaatcagtatt |
19956886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 19849586 - 19849802
Alignment:
| Q |
35 |
gtctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcatt |
134 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||| |||| | |||| |
|
|
| T |
19849586 |
gtctatagagcaatatctcccacatagagtctctttgcaattcggaatggatcaagatgttccaagttatgtgccgaggttaaatgatactaaagacatt |
19849685 |
T |
|
| Q |
135 |
gcttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtgga |
234 |
Q |
| |
|
|||||| |||||||||| |||| | ||||| | ||||||||| ||||| || |||| ||||| ||||| ||| ||||||||||| |||||||| |
|
|
| T |
19849686 |
gcttggcaaaactattgcagacccgtccatgataaacgtttgtattttccaccgaggcttttcgaggctgatgttaccgtacgttatgcaaagtggtgga |
19849785 |
T |
|
| Q |
235 |
ggcaatcaatattgggt |
251 |
Q |
| |
|
||| || |||||||| |
|
|
| T |
19849786 |
agcactcggtattgggt |
19849802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 19812874 - 19813078
Alignment:
| Q |
36 |
tctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattg |
135 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||| |||||| | |||| | | |||| |
|
|
| T |
19812874 |
tctatagagcaatatcttccacatagagttgctatgcaatttggaattgatcaagatgttccaagttatgtgcctaggttcaataaaactaaagtgattg |
19812973 |
T |
|
| Q |
136 |
cttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggag |
235 |
Q |
| |
|
| ||||||||||| || || || |||| ||||| | | |||||||| ||||||||||||| |||||||||||| ||||| | ||||| | |||||||| |
|
|
| T |
19812974 |
catggaaaaactactgcaggctcatatctgataaaaaattgtattttccaccaagactttttgaggcagatgttaccacgcattatgtcaagtggtggaa |
19813073 |
T |
|
| Q |
236 |
gcaat |
240 |
Q |
| |
|
||||| |
|
|
| T |
19813074 |
gcaat |
19813078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 42 - 234
Target Start/End: Original strand, 19819157 - 19819349
Alignment:
| Q |
42 |
gagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttgga |
141 |
Q |
| |
|
||||||||||| ||||||||||| || |||| || |||| |||||||||||||| |||||||| |||| ||||||||||||| || ||||||||||| |
|
|
| T |
19819157 |
gagcaatatcttccacatagagttgctatgcagtttggaattgatcaagatgttcctggttatgtggctaggttcaatgagactaaatacattgcttgga |
19819256 |
T |
|
| Q |
142 |
aaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtgga |
234 |
Q |
| |
|
||||||| || || | |||| ||||| | | |||||||| ||||||||| | | |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
19819257 |
aaaactactgcaggccaatatctgataaaaacttgtattttccaccaagattatttgaggcagatgttaccacacgttatgcaaggtggtgga |
19819349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 19832467 - 19832664
Alignment:
| Q |
42 |
gagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttgga |
141 |
Q |
| |
|
||||||||||| ||||||||||| || |||| | |||| |||||||||||||| |||||||| |||| ||||||||||||| || ||||||||||| |
|
|
| T |
19832467 |
gagcaatatcttccacatagagttgctatgcagattggaattgatcaagatgttcctggttatgtggctaggttcaatgagactaaatacattgcttgga |
19832566 |
T |
|
| Q |
142 |
aaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaa |
239 |
Q |
| |
|
||||||| || || | |||| ||||| | | |||||||| ||||||||| | | |||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
19832567 |
aaaactactgcaggccaatatctgataaaaacttgtattttccaccaagattatttgaggcagatgttaccacacgttatgcaaggtggtggaagcaa |
19832664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 242
Target Start/End: Complemental strand, 20033861 - 20033655
Alignment:
| Q |
36 |
tctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattg |
135 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| | | || |
|
|
| T |
20033861 |
tctatagagcaatatcttccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctaggttcaacgagactaaagagaatg |
20033762 |
T |
|
| Q |
136 |
cttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggag |
235 |
Q |
| |
|
|||||| |||||| ||| | | || | |||| | |||||||||| ||||||||| | | |||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
20033761 |
cttggagaaactactgtcggcccatctctgatgaaaatttgtattttccaccaagattatttgaggcagatgttaccacgcgttatgcaaactggtggaa |
20033662 |
T |
|
| Q |
236 |
gcaatca |
242 |
Q |
| |
|
||||||| |
|
|
| T |
20033661 |
gcaatca |
20033655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 35 - 222
Target Start/End: Complemental strand, 20036131 - 20035944
Alignment:
| Q |
35 |
gtctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcatt |
134 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| || ||||||| |||| |||||||||||||| ||||| ||| |||| | |||| | |||| | | ||| |
|
|
| T |
20036131 |
gtctatagagcaatatcttccacatagagttgctatgcaatttggaattgatcaagatgttccgagttacgtggctaggtgcaataaaactaaagtgatt |
20036032 |
T |
|
| Q |
135 |
gcttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatg |
222 |
Q |
| |
|
||||||| |||||| || || || |||| ||||| | | |||||||| ||||||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
20036031 |
gcttggagaaactactgcaggctcatatctgataaaaaattgtattttccaccaagactttttgaggcagatgttaccacatgttatg |
20035944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 36 - 249
Target Start/End: Original strand, 19951715 - 19951928
Alignment:
| Q |
36 |
tctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattg |
135 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||||||| |||||||||||||||||| |||||||||||||| |||||| | |||| | | |||| |
|
|
| T |
19951715 |
tctatagagcaatatcttccacatagagttgctatgcaatttgcaatggatcaagatgttccgagttatgtgcctaggttcaataaaactaaagtgattg |
19951814 |
T |
|
| Q |
136 |
cttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggag |
235 |
Q |
| |
|
||||||||||||| || || | |||| ||||| | |||||||||| ||| ||| | ||| |||||| |||| | || |||||||||| ||||||| |
|
|
| T |
19951815 |
cttggaaaaactactgcaggcccatatctgataaaaatttgtattttccatcaaaaatttttgaggctgatgctagcatgcgttatgcaaagtggtggga |
19951914 |
T |
|
| Q |
236 |
gcaatcaatattgg |
249 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
19951915 |
gcaatcagtattgg |
19951928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 19990125 - 19990205
Alignment:
| Q |
45 |
caatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagact |
125 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
19990125 |
caatatctcccacatagagttgctttgcaatttggaatggatcaagatattccaagttacgtgcctaggttcaatgagact |
19990205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 24839526 - 24839392
Alignment:
| Q |
7 |
agtttctgagtaagttggatttgagtctgtctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgt |
106 |
Q |
| |
|
|||||||||| |||||||||||||||| || || |||||||| ||||||||||| || |||||||| || | |||||||||||||| ||||||| |
|
|
| T |
24839526 |
agtttctgagctagttggatttgagtct----atagaacaatatctaccacatagagttgctatgcaattcggatttgatcaagatgttcctggttatgt |
24839431 |
T |
|
| Q |
107 |
gcctagattcaatgagactagattcattgcttggaaaaa |
145 |
Q |
| |
|
| ||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
24839430 |
gtctagactcaatgagactaaagccattgcttggaaaaa |
24839392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 19858669 - 19858772
Alignment:
| Q |
42 |
gagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttgga |
141 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||| | | |||||||||||||| |||||||| ||||||||||||| || | |||||||||||| |
|
|
| T |
19858669 |
gagcaatatctaccacatagagttgctatgcaatttgaatttgatcaagatgttcctggttatgtgtctagattcaatgaatctcaagtcattgcttgga |
19858768 |
T |
|
| Q |
142 |
aaaa |
145 |
Q |
| |
|
|||| |
|
|
| T |
19858769 |
aaaa |
19858772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 294
Target Start/End: Original strand, 20046710 - 20046969
Alignment:
| Q |
35 |
gtctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcatt |
134 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||| ||| ||||||| || | || ||||||||||| ||||||||||| || | ||| | | | | | | |
|
|
| T |
20046710 |
gtctatagagcagtatcttccacatagagtttctatgcaatttggacttgaccaagatgttccgagttatgtgccaaggtgcaacaatagaaagtctact |
20046809 |
T |
|
| Q |
135 |
gcttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtgga |
234 |
Q |
| |
|
|||||||| ||||| || || | || | ||||| | |||||||||| ||||||||| | | |||||||||||| |||| ||||||| || |||||||| |
|
|
| T |
20046810 |
gcttggaacaactactgcaggcccatgtctgataaaaatttgtattttccaccaagattgtttgaggcagatgttaccatgcgttatgtaaagtggtgga |
20046909 |
T |
|
| Q |
235 |
ggcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtg |
294 |
Q |
| |
|
|||||| | ||||||| || ||||| ||| | || |||||||| ||||| ||||||| |
|
|
| T |
20046910 |
agcaatcggtgttgggtcgtggagatttcgttgagaaaattgtgaatcggaatagaagtg |
20046969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 19854097 - 19854200
Alignment:
| Q |
42 |
gagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttgga |
141 |
Q |
| |
|
||||||||||| ||||||||||| || |||||| || | |||||||||||||| |||||||| | ||| ||||||||||| | ||||||| |||| |
|
|
| T |
19854097 |
gagcaatatctaccacatagagttgctaggcaatttggatttgatcaagatgttcctggttatgtgtccagactcaatgagactcaagtcattgcatgga |
19854196 |
T |
|
| Q |
142 |
aaaa |
145 |
Q |
| |
|
|||| |
|
|
| T |
19854197 |
aaaa |
19854200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 1717811 - 1718015
Alignment:
| Q |
36 |
tctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattg |
135 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| || ||||| |
|
|
| T |
1717811 |
tctatagagcagtatctgccacatagagttgctatgcaatttggaatggatcaagatgttccaagtgatgtgcctagattcaatgaggctaaatccattg |
1717910 |
T |
|
| Q |
136 |
cttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggag |
235 |
Q |
| |
|
|||||||| |||| || || | |||| ||||| | | ||||||| ||| | ||| ||| ||||| | |||| ||| |||||||||||| |||||||| |
|
|
| T |
1717911 |
cttggaaacactactgcaggcccatatctgataaaaaaatgtattttccatcgagattttttgagggaaatgttacctcacgttatgcaaggtggtggaa |
1718010 |
T |
|
| Q |
236 |
gcaat |
240 |
Q |
| |
|
||||| |
|
|
| T |
1718011 |
gcaat |
1718015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 289
Target Start/End: Original strand, 38483710 - 38483819
Alignment:
| Q |
174 |
ttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaaca |
273 |
Q |
| |
|
|||||| | ||||| | ||||| |||||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||||||| |||| |
|
|
| T |
38483710 |
ttgtatattccaccgatactttttgaggcagatgtaaccacacgttatgcaatgtggtggaaaca------attaggtcatggcgattttgttaagaaca |
38483803 |
T |
|
| Q |
274 |
ttgtgaagcggaagag |
289 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
38483804 |
ttgtgaagtggaagag |
38483819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 22655833 - 22655640
Alignment:
| Q |
46 |
aatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaa |
145 |
Q |
| |
|
||||||| |||| |||||| ||| ||||||| |||| |||||||||||||| ||||||| |||| ||||||||||||| || ||||||||||||||| |
|
|
| T |
22655833 |
aatatcttccacgtagagtttctatgcaatttggaattgatcaagatgttccgggttatgtagctaggttcaatgagactaaatacattgcttggaaaaa |
22655734 |
T |
|
| Q |
146 |
ctattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaa |
239 |
Q |
| |
|
||| || |||| |||| ||||| | | |||||||| ||||||||| | | |||| |||||| ||||||| |||||||| |||||||| |||| |
|
|
| T |
22655733 |
ctactgcagacccatatctgataaaaacttgtattttccaccaagattatttgagatagatgttaccacacattatgcaaggtggtggaagcaa |
22655640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 11544660 - 11544770
Alignment:
| Q |
35 |
gtctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcatt |
134 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| || ||||||| |||||||||||||||||||| || |||||||||||||||||||| | | |||| |
|
|
| T |
11544660 |
gtctattgagcaatatcttccacatagagttgctatgcaatttggaatggatcaagatgttccagcttgtgtgcctagattcaatgagaatgaaaccatt |
11544759 |
T |
|
| Q |
135 |
gcttggaaaaa |
145 |
Q |
| |
|
||||||||||| |
|
|
| T |
11544760 |
gcttggaaaaa |
11544770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 11563908 - 11563841
Alignment:
| Q |
78 |
agaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcattgcttggaaaaa |
145 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
11563908 |
agaatggatcaagatgttccagcttgtgtgcctagattcaatgagaatgaaaccattgcttggaaaaa |
11563841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 22689225 - 22689119
Alignment:
| Q |
7 |
agtttctgagtaagttggatttgagtctgtctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgt |
106 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||||||||||| ||||||||||| || ||| || ||||||||||||||||||| ||||||| |
|
|
| T |
22689225 |
agtttctgagctagttggatttgagtct----atagagcaatatctaccacatagagttgctaggcagtttggaatggatcaagatgttcctggttatgt |
22689130 |
T |
|
| Q |
107 |
gcctagattca |
117 |
Q |
| |
|
||||||||| |
|
|
| T |
22689129 |
ctctagattca |
22689119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 39191504 - 39191394
Alignment:
| Q |
35 |
gtctatggagcaatatctcccacatagagtctctttgcaattcagaatggatcaagatgttccaagttatgtgcctagattcaatgagactagattcatt |
134 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| || ||||||| |||||||||||||||||||| || |||||||||||||||||||||| | |||| |
|
|
| T |
39191504 |
gtctattgagcaatatcttccacatagagttgctatgcaatttggaatggatcaagatgttccagattgtgtgcctagattcaatgagactgaaaccatt |
39191405 |
T |
|
| Q |
135 |
gcttggaaaaa |
145 |
Q |
| |
|
||||||||||| |
|
|
| T |
39191404 |
gcttggaaaaa |
39191394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 308
Target Start/End: Complemental strand, 12495422 - 12495246
Alignment:
| Q |
132 |
attgcttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggt |
231 |
Q |
| |
|
||||||| ||||||||||| ||| || || | | ||| | |||||||||| ||||| |||| | |||||||||| | |||| ||||||| || || || |
|
|
| T |
12495422 |
attgcttcgaaaaactattctaggctcatgtctaataaaaatttgtattttgcaccatgactgtttgaggcagatattaccatgcgttatgtaaagttgt |
12495323 |
T |
|
| Q |
232 |
ggaggcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtgaaagctcaaggaaa |
308 |
Q |
| |
|
||| |||||| || |||||||||| ||||||||||| || |||||||||| |||||||||| |||||||||||| |
|
|
| T |
12495322 |
ggaagcaatcgatgttgggtcatggagattttgttaagaagattgtgaagcagaagagaagtttgagctcaaggaaa |
12495246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 308
Target Start/End: Complemental strand, 12519226 - 12519050
Alignment:
| Q |
132 |
attgcttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggt |
231 |
Q |
| |
|
||||||| ||||||||||| ||| || || | | ||| | |||||||||| ||||| |||| | ||||||||| | |||| ||||||| || ||||| |
|
|
| T |
12519226 |
attgcttcgaaaaactattctaggctcatgtctaataaaaatttgtattttgcaccatgactgtttgaggcagaaattaccatgcgttatgtaaagtggt |
12519127 |
T |
|
| Q |
232 |
ggaggcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtgaaagctcaaggaaa |
308 |
Q |
| |
|
||| |||||| || |||||||||| ||||||||||| || |||||||||| |||||||||| |||||||||||| |
|
|
| T |
12519126 |
ggaagcaatcgatgttgggtcatggagattttgttaagaagattgtgaagcagaagagaagtttgagctcaaggaaa |
12519050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 308
Target Start/End: Complemental strand, 12579479 - 12579343
Alignment:
| Q |
172 |
atttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggaggcaatcaatattgggtcatgtcgattttgttaaaaa |
271 |
Q |
| |
|
|||||||||| ||||| |||| | |||||||||| | |||| ||||||| || |||||||| ||||||||| |||||||||| ||||| ||||| || |
|
|
| T |
12579479 |
atttgtattttgcaccatgactgtttgaggcagatattaccatgcgttatgtaaagtggtggaagcaatcaatgttgggtcatgaagatttcgttaagaa |
12579380 |
T |
|
| Q |
272 |
cattgtgaagcggaagagaagtgaaagctcaaggaaa |
308 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| |
|
|
| T |
12579379 |
gattgtgaagcagaagagaagtttgagctcaaggaaa |
12579343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 136 - 294
Target Start/End: Complemental strand, 6397208 - 6397050
Alignment:
| Q |
136 |
cttggaaaaactattgtagacttatatttgatacagatttgtatttcccaccaagactttatgaggcagatgtaaccacacgttatgcaatgtggtggag |
235 |
Q |
| |
|
||||||||||||| | ||| | ||| | ||||| | |||||||||| ||||||||||| | |||||| ||||| || | | |||||||| ||||| || |
|
|
| T |
6397208 |
cttggaaaaactactctaggcctatgtctgataaaaatttgtattttccaccaagactgtttgaggctgatgttactatgcattatgcaaagtggtagaa |
6397109 |
T |
|
| Q |
236 |
gcaatcaatattgggtcatgtcgattttgttaaaaacattgtgaagcggaagagaagtg |
294 |
Q |
| |
|
|||||| | || ||||||| ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
6397108 |
gcaatcggtgttaggtcatggagattttgttaagaagattgtgaagcggaagagaagtg |
6397050 |
T |
|
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