View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503_low_23 (Length: 302)

Name: NF1503_low_23
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503_low_23
NF1503_low_23
[»] chr4 (3 HSPs)
chr4 (19-292)||(36508702-36508975)
chr4 (234-289)||(37339259-37339314)
chr4 (156-223)||(37339930-37339997)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 36508975 - 36508702
Alignment:
19 tacagtgggtaagactcttgaatgctttcttgcaagaagcaaaatggtttgcttctgggaatgttccaaagtcagaggagtatttgaagaatgccatagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36508975 tacagtgggtaagactcttgaatgctttcttgcaagaagcaaaatggtttgcttctgggaatgttccaaagtcagaggagtatttgaagaatgccatagt 36508876  T
119 aagcactggggtacacgtgatacttgtgcatgctttcttttccatgggtcaaggtataactgagaaaaccgtgtctctaatggatgacttcccaaccatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36508875 aagcactggggtacacgtgatacttgtgcatgctttcttttgcatgggtcaaggtataactgagaaaaccgtgtctctaatggatgacttcccaaccatt 36508776  T
219 atatctacaacagccaaaattctaaggctatgtgatgacttggaaggcgacaaggtaggaaaacatcacctatg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
36508775 atatctacaacagccaaaattctaaggctatgtgatgacttggaaggcgataaggtaggaaaacatcacctatg 36508702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 37339314 - 37339259
Alignment:
234 aaaattctaaggctatgtgatgacttggaaggcgacaaggtaggaaaacatcacct 289  Q
    |||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||    
37339314 aaaattctaaggttatgtgatgacttggaaagcgacaaggtaagaaaacattacct 37339259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 37339997 - 37339930
Alignment:
156 ttttccatgggtcaaggtataactgagaaaaccgtgtctctaatggatgacttcccaaccattatatc 223  Q
    |||| ||||||| ||| ||||| ||| ||||||| ||||||||||||  ||||||| |||||||||||    
37339997 ttttacatgggtaaagatataattgaaaaaaccgagtctctaatggacaacttccctaccattatatc 37339930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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