View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_low_24 (Length: 297)
Name: NF1503_low_24
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 44237481 - 44237731
Alignment:
| Q |
13 |
aatattcgaggcgctgggattcctagaaaacctaatcccgctaatatattgtagtataaaaccatgaaataaacacattcttggtccaaaacatccttag |
112 |
Q |
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||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44237481 |
aatattccaggcgctaggattcctagaaaacctaatccctctaatatattgtagtataaaaccatgaaataaacacat----------------ccttag |
44237564 |
T |
|
| Q |
113 |
tccaaaccaactaaactactcatctccaaaatggaaatcaaattccctttccttaccttactttactttcctttcattttctgcgcgcggtagatctaat |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44237565 |
tccaaaccaactaaactgctcatctccaaaatggaaatcaaattccctttccttaccttactttactttcctttcattttctgcgcgcggtagatctaat |
44237664 |
T |
|
| Q |
213 |
tccctttctttttcatctcactcttgtgaagaaggtaataatgaattgcatatgcaatgccacgcagt |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44237665 |
tccctttctttttcatctcactcttgtgaagaaggtaataatgaattgcatatgc-atgccacgcagt |
44237731 |
T |
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