View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_low_3 (Length: 583)
Name: NF1503_low_3
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 3114907 - 3114360
Alignment:
| Q |
1 |
caggcgcgacgattggtatatattgttggttggtctgtttactacaatgttagtctcattagggatactagagatggaaaagattgtacattaggtgatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3114907 |
caggcgcgacgattggtatatattgttggttggtctgtttactacaatgttagtctcattagggatactagagatggaaaagattgtacattaggtgatc |
3114808 |
T |
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| Q |
101 |
ttctcaaagctaaatcacaagaaggtgtgagagtgcttctactagtgtgggatgatcctacttctaacagcatgcttggatataaaacagtaatgatctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3114807 |
ttctcaaagctaaatcacaagaaggtgtgagagtgcttctacttgtgtgggatgatcctacttctaacagcatgcttggatataaaacagtaatgatctt |
3114708 |
T |
|
| Q |
201 |
cnnnnnnnnctttctatttatgtttctgatacttggctctctaactctattagtgtattcccttggcatgccttgctgctacatttgaataggcaattaa |
300 |
Q |
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| T |
3114707 |
caaaaaaaactttctatttatgtttctgatacttggctctctaactctattagtgtattcccttggcatgccttgctgctatttttgaataggcaattaa |
3114608 |
T |
|
| Q |
301 |
gttgtaaccagtttcttacttcttttaccaaatttcaatgatttattgatttcttgatatgtaggttggacttatgaacacttatgatgaggaaactcgc |
400 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3114607 |
gttgtaaccagtttcttacttcttt-accaaatttctatgatttattgatttcttgatatgtaggttggacttatgaacacttatgatgaggaaactcgc |
3114509 |
T |
|
| Q |
401 |
agctttttcaagcactcttcagttagggtgcttctttgcccaagatccggaggaaaaggacatagcttgctcaaacaacaggtcagttagagaaaaacta |
500 |
Q |
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| T |
3114508 |
agctttttcaagcactcttcagttagggtgcttctttgcccaagatctggaggaaaaggacatagcttgctgaaacaacaggtcagttagagaaaaacta |
3114409 |
T |
|
| Q |
501 |
tttttgtatgtctaactgcatagtaccgaattacaaaaaatgctttgga |
549 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3114408 |
tttttgtatgtctaactgcatagtactgaattacaaaaaatgctttgga |
3114360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 3120763 - 3120567
Alignment:
| Q |
1 |
caggcgcgacgattggtatatattgttggttggtctgtttactacaatgttagtctcattagggatactagagatggaaaagattgtacattaggtgatc |
100 |
Q |
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||||| || |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3120763 |
caggctcgtcgattggtctatattgttggttggtccgtgtactacaatgttagtctcattagggatactagagatggaaaagattgtacattaggtgatc |
3120664 |
T |
|
| Q |
101 |
ttctcaaagctaaatcacaagaaggtgtgagagtgcttctactagtgtgggatgatcctacttctaacagcatgcttggatataaaacagtaatgat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |
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| T |
3120663 |
ttctcaaagctaaatcacaagaaggtgtgagagtgcttctacttgtgtgggatgatcctacttctaaaagcatgtttggatataaaacggtaatgat |
3120567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 347 - 514
Target Start/End: Complemental strand, 3120458 - 3120293
Alignment:
| Q |
347 |
tgatttcttgatatgtaggttggacttatgaacacttatgatgaggaaactcgcagctttttcaagcactcttcagttagggtgcttctttgcccaagat |
446 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3120458 |
tgatttgttgatatgtaggttggacttatgaacacttatgacgaggaaactcgcagttttttcaagcactcttcagttaaggtgcttctttgcccaagat |
3120359 |
T |
|
| Q |
447 |
ccggaggaaaaggacatagcttgctcaaacaacaggtcagttagagaaaaactatttttgtatgtcta |
514 |
Q |
| |
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| ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
3120358 |
ctggaggaaaaggacatagctggctcaaacagcaggtcagtt--tgaaaaactatttttgtatgtcta |
3120293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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