View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_low_30 (Length: 254)
Name: NF1503_low_30
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_low_30 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 4951160 - 4950924
Alignment:
| Q |
1 |
gtaactactacagggccaataggacaaatgatggtggaggttctggtgatagtgatagtggatacctcaagtagcaaaacatataatgaatcaaaagggt |
100 |
Q |
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| T |
4951160 |
gtaactactacagggccaatatgacaaatgatggtggaggttctggtgatagtgatagtggatacctcaagtagcaaaacatataatgaatcaaaagggt |
4951061 |
T |
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| Q |
101 |
atccactataaacattgtggacgaggttttttatggtcttctctgcatac-ccccatctttcattcataaaaaacttgataatatcatcaagtggtgcag |
199 |
Q |
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| T |
4951060 |
atccactaaaaacattgtggacgaggttttttatggtcttctctgcataccccccatctttcattcataaaaaacttgataatatcatcaagtggtgcag |
4950961 |
T |
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| Q |
200 |
gtgtcgcttgaaatcacaatataccaggttttaaata |
236 |
Q |
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| T |
4950960 |
gtgtcgcttgaaatcacaatatacaaggttgtaaata |
4950924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 223756 - 223878
Alignment:
| Q |
52 |
gtgatagtggatacctcaagtagcaaaacatataatgaatcaaaagggtatccactataaacattgtggacgaggtttttt-----------atggtctt |
140 |
Q |
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| T |
223756 |
gtgatagtggatacctcaagtagcaaaacata----caatcaaaagtgtatccactaaaaacattgtggacgaggttttttatgaggccatcatggtctt |
223851 |
T |
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| Q |
141 |
ctctgcatacccccatctttcattcat |
167 |
Q |
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| T |
223852 |
ctctgcatacccccatctttcattcat |
223878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 10484747 - 10484846
Alignment:
| Q |
7 |
actacagggccaataggacaaatgatggtggaggttctggtgatagtgatagtggatacctcaagtagcaaaacatataatgaatcaaaagggtatccac |
106 |
Q |
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| T |
10484747 |
actacagggtcaataggacaaatgatggtggaggttctg------gtgatagtggatacctcaagtagcaaaacatat----aatcaaaagagtatccac |
10484836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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