View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_low_31 (Length: 249)
Name: NF1503_low_31
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1503_low_31 |
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[»] scaffold0495 (1 HSPs) |
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[»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 207
Target Start/End: Complemental strand, 37193406 - 37193273
Alignment:
Q |
74 |
gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt |
173 |
Q |
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T |
37193406 |
gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccactgtgatttt |
37193307 |
T |
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Q |
174 |
tcaccatggttttgtgagtttccaaacacaggct |
207 |
Q |
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T |
37193306 |
tcaccgtggtttcatgagtttccaaacacaggct |
37193273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 207
Target Start/End: Complemental strand, 37182274 - 37182143
Alignment:
Q |
74 |
gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt |
173 |
Q |
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T |
37182274 |
gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccac--tgatttt |
37182177 |
T |
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Q |
174 |
tcaccatggttttgtgagtttccaaacacaggct |
207 |
Q |
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T |
37182176 |
tcaccgtgttttcatgagtttccaaacacaggct |
37182143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 29461186 - 29461262
Alignment:
Q |
80 |
ttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagcttt |
156 |
Q |
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T |
29461186 |
ttgtgcggtgagtgaccgctaccgcacgtttagagtctatcttaccatggtattgagaagctagttggtgtagcttt |
29461262 |
T |
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Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 21105500 - 21105366
Alignment:
Q |
74 |
gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt |
173 |
Q |
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T |
21105500 |
gtttgtttgtgccgtgagtgaccgctactgcatgtttaaagtcaatctcaccgtggtatttagaagctagttggtgtagctttacgccaaccgtgccttt |
21105401 |
T |
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Q |
174 |
tcaccatggttttgtgagtttccaaacacaggcta |
208 |
Q |
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T |
21105400 |
tcaccatggttttgttagttttcaaacacatgcta |
21105366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 42036841 - 42036775
Alignment:
Q |
74 |
gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagc |
140 |
Q |
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T |
42036841 |
gtttatttgtgcggtgagtgaccgctaatgcacattcaaagtcaatatcaccgtggttttgagaagc |
42036775 |
T |
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Target: scaffold0495 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 10718 - 10845
Alignment:
Q |
76 |
ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc |
175 |
Q |
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T |
10718 |
ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc |
10817 |
T |
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Q |
176 |
accatggttttgtgagtttccaaacaca |
203 |
Q |
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T |
10818 |
accatggttttgtgagttttcaaacaca |
10845 |
T |
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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 10233990 - 10234117
Alignment:
Q |
76 |
ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc |
175 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||| | ||||||||||||||||||| | || |||||||||| || || ||||| |
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T |
10233990 |
ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc |
10234089 |
T |
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Q |
176 |
accatggttttgtgagtttccaaacaca |
203 |
Q |
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T |
10234090 |
accatggttttgtgagttttcaaacaca |
10234117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 4619903 - 4619835
Alignment:
Q |
133 |
tgagaagctagcttatgtagctttttgcctactgtgccttttcaccatggttttgtgagtttccaaaca |
201 |
Q |
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T |
4619903 |
tgagaagctagctactgtagctttaagccaacggtaccttttcaccttggttttgttagtctccaaaca |
4619835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 969 - 1037
Alignment:
Q |
133 |
tgagaagctagcttatgtagctttttgcctactgtgccttttcaccatggttttgtgagtttccaaaca |
201 |
Q |
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T |
969 |
tgagaagctagctactgtagctttaagccaacggtaccttttcaccttggttttgttagtctccaaaca |
1037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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