View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_low_36 (Length: 236)
Name: NF1503_low_36
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1503_low_36 |
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[»] scaffold0564 (1 HSPs) |
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[»] scaffold0205 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 8880141 - 8880335
Alignment:
Q |
26 |
ttgtcgcacctgctcttttacttctttt-taagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaata |
124 |
Q |
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|
|||||||| ||||||||||| || |||| |||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||| || |
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|
T |
8880141 |
ttgtcgcagctgctcttttatttattttttaagttgctatctgataacaggttcggttctttcgttatttattagctttctatttagtatgaactcagta |
8880240 |
T |
|
Q |
125 |
gaagtaaatttagtgttgaatttaattatgtctgagtagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaatta |
219 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||| |
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|
T |
8880241 |
gaagtaaatttagtgtttgatttaattatgtctgagtagtctaacttgagtccaaaatggaaggaccgtcgtactgacggaactcatgtaaatta |
8880335 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 32879129 - 32879035
Alignment:
Q |
125 |
gaagtaaatttagtgttgaatttaattatgtctgagtagtct-aacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaatt |
218 |
Q |
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||||||||| ||||| | ||||||| |||| |||||||| | || || ||||||||||||||||||| || |||||| |||||||||||||||| |
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T |
32879129 |
gaagtaaatgtagtgcttaatttaagtatgagtgagtagttttaaattcagtccaaaacgaaaggaccgtcctaccgatggaactcatgtaaatt |
32879035 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 1068430 - 1068519
Alignment:
Q |
126 |
aagtaaatttagtgttgaatttaattatgtctgagtagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaa |
215 |
Q |
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|||||| ||||||| ||||||||||| |||||||||||| |||||| |||||||||||||| | ||||||||| ||||| ||||| |
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T |
1068430 |
aagtaattttagtgcataatttaattattagtgagtagtctaaattgagttcaaaacgaaaggactgttgtaccgacgaaactcgtgtaa |
1068519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 40578530 - 40578712
Alignment:
Q |
1 |
aagcttcagattgttgcagtggtgtttgtcgcacctgctcttttacttctttttaagttgccatctgataacatgttaggttctttcattatttattagc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | ||| ||||| || |
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T |
40578530 |
aagcttcagattgttgcagtggtcattgtcgcacctgctcttttacttctttttaagttgccatctgataacaggttccgttcttacgtta-ttatttgc |
40578628 |
T |
|
Q |
101 |
tttctatttagtatgaagtcaatagaagtaaatttagtgttgaatttaattatgtctgagtagtctaacttgagtccaaaacga |
184 |
Q |
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||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
T |
40578629 |
tttctatttagtatgaattcagcagaagtaaatttagtgtctaatttaattatgtctgagtagtctaaattgagtccaaaacga |
40578712 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 28360821 - 28360893
Alignment:
Q |
144 |
atttaattatgtctgagtagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaa |
216 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||| |
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T |
28360821 |
atttaattatgtctgagtagtctactttgagtccaaaacgaaaggatcgtcgtaccgacggaactcatgtaaa |
28360893 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 16548304 - 16548198
Alignment:
Q |
83 |
ctttcattatttattagctttctatttagtatgaagtcaatagaagtaaatttagtgttgaatttaattatgtctgagtagtctaacttgagtccaaaac |
182 |
Q |
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||||| ||||||||| | ||||| |||| |||||| ||| |||||||||||||||| |||||||||||| |||||||||||| |||| |||||||| |
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T |
16548304 |
ctttcgttatttatttgttttctctttaatatgaattcagcagaagtaaatttagtgcataatttaattatgagtgagtagtctaaattgaatccaaaac |
16548205 |
T |
|
Q |
183 |
gaaagga |
189 |
Q |
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|
||||||| |
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|
T |
16548204 |
gaaagga |
16548198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 27272444 - 27272495
Alignment:
Q |
133 |
tttagtgttgaatttaattatgtctgagtagtctaacttgagtccaaaacga |
184 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||| ||||||||| |
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|
T |
27272444 |
tttagtgtataatttaattatgtctgagtagtctaaattgagcccaaaacga |
27272495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 23068206 - 23068263
Alignment:
Q |
161 |
tagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaatt |
218 |
Q |
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|||| ||| |||||||| |||| | |||| ||||||| |||||||||||||||||||| |
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T |
23068206 |
tagtttaaattgagtccgaaacaagaggaacatcgtatcgacggaactcatgtaaatt |
23068263 |
T |
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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 15331102 - 15331249
Alignment:
Q |
26 |
ttgtcgcacctgctcttttacttctttt-taagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaata |
124 |
Q |
|
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|||||||| ||||||||||| || |||| |||||||| ||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||| ||| || |
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T |
15331102 |
ttgtcgcagctgctcttttatttattttttaagttgctatctgataacaggttcagttctttcgttatttattaggtttctatttagtatgaactcagta |
15331201 |
T |
|
Q |
125 |
gaagtaaatttagtgttgaatttaattatgtctgagtagtctaacttg |
172 |
Q |
|
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||||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
T |
15331202 |
gaagtaaatttagtgtttgatttacttatgtctgagtagtctaacttg |
15331249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 15511471 - 15511618
Alignment:
Q |
26 |
ttgtcgcacctgctcttttacttctttt-taagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaata |
124 |
Q |
|
|
|||||||| ||||||||||| || |||| |||||||| ||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||| ||| || |
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|
T |
15511471 |
ttgtcgcagctgctcttttatttattttttaagttgctatctgataacaggttcagttctttcgttatttattaggtttctatttagtatgaactcagta |
15511570 |
T |
|
Q |
125 |
gaagtaaatttagtgttgaatttaattatgtctgagtagtctaacttg |
172 |
Q |
|
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||||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
T |
15511571 |
gaagtaaatttagtgtttgatttacttatgtctgagtagtctaacttg |
15511618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 21178619 - 21178545
Alignment:
Q |
144 |
atttaattatgtctgagtagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaatt |
218 |
Q |
|
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| |
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|
T |
21178619 |
atttaattatgtctgagtagtctactttgagtccaaaacgaaaggattgtcgtaccgacggaactcatgtcaatt |
21178545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 27440418 - 27440561
Alignment:
Q |
29 |
tcgcacctgctcttttacttctttt-taagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaatagaa |
127 |
Q |
|
|
||||| ||||||||||| || |||| |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||| |
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|
T |
27440418 |
tcgcagctgctcttttatttattttttaagttgctatctgataacatgttccgttcttttgttatttattagctttctatttagtatgaactcagtagaa |
27440517 |
T |
|
Q |
128 |
gtaaatttagtgttgaatttaattatgtctgagtagtctaactt |
171 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||| |
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|
T |
27440518 |
gtaaatttagtgtttgatttaattatgtatgagtagtctaactt |
27440561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 14224076 - 14224203
Alignment:
Q |
35 |
ctgctcttttacttctttttaagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaatagaagtaaatt |
134 |
Q |
|
|
||||||||||||| |||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| || ||||| ||||| ||| |||||| | ||| |
|
|
T |
14224076 |
ctgctcttttactcgttttta-gttgccatctgataacaggttaggtactttcaatatttattagcttcctctttagcatgaactcagtagaaggatatt |
14224174 |
T |
|
Q |
135 |
tagtgttgaatttaattatgtctgagtag |
163 |
Q |
|
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||||||| ||||||||||||||||||||| |
|
|
T |
14224175 |
tagtgtttaatttaattatgtctgagtag |
14224203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 14234171 - 14234298
Alignment:
Q |
35 |
ctgctcttttacttctttttaagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaatagaagtaaatt |
134 |
Q |
|
|
||||||||||||| |||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| || ||||| ||||| ||| |||||| | ||| |
|
|
T |
14234171 |
ctgctcttttactcgttttta-gttgccatctgataacaggttaggtactttcaatatttattagcttcctctttagcatgaactcagtagaaggatatt |
14234269 |
T |
|
Q |
135 |
tagtgttgaatttaattatgtctgagtag |
163 |
Q |
|
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||||||| ||||||||||||||||||||| |
|
|
T |
14234270 |
tagtgtttaatttaattatgtctgagtag |
14234298 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 18274048 - 18274122
Alignment:
Q |
144 |
atttaattatgtctgagtagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaatt |
218 |
Q |
|
|
|||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
T |
18274048 |
atttaattatgtttgagtagtctactttgagtccaaaacgaaaggaccgtcgtaccgacggaactcatgtaaatt |
18274122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 9416090 - 9416136
Alignment:
Q |
170 |
ttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaa |
216 |
Q |
|
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||||||||||||||| || ||| |||||||||||| ||||||||||| |
|
|
T |
9416090 |
ttgagtccaaaacgagagcaccgtcgtaccgacgggactcatgtaaa |
9416136 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 28386629 - 28386756
Alignment:
Q |
35 |
ctgctcttttacttctttttaagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaatagaagtaaatt |
134 |
Q |
|
|
||||||||||||| |||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| || ||||| ||||| ||| |||||| | ||| |
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|
T |
28386629 |
ctgctcttttactcgttttta-gttgccatctgataacaggttaggtactttcaatatttattagcttcctctttagcatgaactcagtagaaggatatt |
28386727 |
T |
|
Q |
135 |
tagtgttgaatttaattatgtctgagtag |
163 |
Q |
|
|
||||||| ||||||||||||||||||||| |
|
|
T |
28386728 |
tagtgtttaatttaattatgtctgagtag |
28386756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 104 - 1
Alignment:
Q |
35 |
ctgctcttttacttctttttaagttgccatctgataacatgttaggttctttcattatttattagctttctatttagtatgaagtcaatagaagtaaatt |
134 |
Q |
|
|
||||||||||||| |||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| || ||||| ||||| ||| |||||| | ||| |
|
|
T |
104 |
ctgctcttttactcgttttta-gttgccatctgataacaggttaggtactttcaatatttattagcttcctctttagcatgaactcagtagaaggatatt |
6 |
T |
|
Q |
135 |
tagtg |
139 |
Q |
|
|
||||| |
|
|
T |
5 |
tagtg |
1 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 2954 - 3028
Alignment:
Q |
144 |
atttaattatgtctgagtagtctaacttgagtccaaaacgaaaggaccatcgtaccgacggaactcatgtaaatt |
218 |
Q |
|
|
|||||||||||||||||||||||| ||| | |||||| ||||||||| ||||||||||||||||||||||||| |
|
|
T |
2954 |
atttaattatgtctgagtagtctactttgtgaccaaaatgaaaggaccgacgtaccgacggaactcatgtaaatt |
3028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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