View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1503_low_37 (Length: 235)
Name: NF1503_low_37
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_low_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 29090350 - 29090553
Alignment:
| Q |
1 |
cacattgagtttgtaaacaccttcatcaacaatcgattttctaaccgtggtgtaaacgtttacacactcttttccgtaaccgttagaaaccatgcactcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29090350 |
cacattgagtttgtaaacaccttcatcaacaatcgattttctaaccgtggtgtaaacgtttacacactcttttccgtaaccgttagaaaccatgcactcg |
29090449 |
T |
|
| Q |
101 |
gcaataatttttaaatcatccaccacatcggaagaaacgcgttcaacttcagagatacaatcctgtgcatcgtgatcatcgtcgtcttccagtgttccac |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29090450 |
gcaataattttcaaatcatccaccacatcggaagaaacgcgttcaacttcagagatacaatcctgtgcatcgtgatcatcgtcgtcttccagtgttccac |
29090549 |
T |
|
| Q |
201 |
catc |
204 |
Q |
| |
|
|||| |
|
|
| T |
29090550 |
catc |
29090553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 204
Target Start/End: Original strand, 29104615 - 29104814
Alignment:
| Q |
5 |
ttgagtttgtaaacaccttcatcaacaatcgattttctaaccgtggtgtaaacgtttacacactcttttccgtaaccgttagaaaccatgcactcggcaa |
104 |
Q |
| |
|
|||||||| |||| ||||||||| || || |||||||| |||||||||||||| ||| ||| |||||||| |||||||| ||||||||||| |||| |
|
|
| T |
29104615 |
ttgagtttataaataccttcatcgacgatggattttctcaccgtggtgtaaactcttatacattcttttccataaccgttttttaccatgcactcagcaa |
29104714 |
T |
|
| Q |
105 |
taatttttaaatcatccaccacatcggaagaaacgcgttcaacttcagagatacaatcctgtgcatcgtgatcatcgtcgtcttccagtgttccaccatc |
204 |
Q |
| |
|
||||| | ||||||||||| |||||||||||| |||||| ||||||||||||||||||| |||| || || ||| || |||||| ||||||| ||||| |
|
|
| T |
29104715 |
taattctcaaatcatccacagcatcggaagaaatgcgttcgacttcagagatacaatcctctgcagcgcgaatatcatcttcttccggtgttcctccatc |
29104814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14250 times since January 2019
Visitors: 8375