View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1503_low_39 (Length: 229)
Name: NF1503_low_39
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_low_39 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 15836014 - 15835786
Alignment:
| Q |
1 |
accaccaccaccactaacaatgtctttgtcgatcaaatggtggacaacttcaattctctgccaagtaaccgaaacccactgatggggttcaccgagaaca |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15836014 |
accaccacaaccactaacaatgtctttgtcgatcaaatggtggacaacttcaattctctggcaagtaaccgaaacccactgatggggttcaccgagaaca |
15835915 |
T |
|
| Q |
101 |
tgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactcaaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15835914 |
tgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactcaaact |
15835815 |
T |
|
| Q |
201 |
agcatggtcccataacccactcaccaccc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15835814 |
agcatggtcccataacccactcaccaccc |
15835786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 19796776 - 19796552
Alignment:
| Q |
1 |
accaccaccaccactaacaatgtctttgtcgatcaaatggtggacaacttcaattctctgccaagtaaccgaaacccactgatggggttcaccgagaaca |
100 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||||||||||| | ||||||||||||||| || ||||||||||||| ||||||||| || ||||||| |
|
|
| T |
19796776 |
accaccacaaccactaacgatgtcttcctcgatcaaatggtcgccaacttcaattctcttggtagaaaccgaaacccaccgatggggttgacagagaaca |
19796677 |
T |
|
| Q |
101 |
tgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactcaaact |
200 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
19796676 |
tgtcaccaacgtttctctccaccggtaacccttgcctcgatttcttcttccatgttgttcctgatactccttctgaaacactcgttgagagactcaaact |
19796577 |
T |
|
| Q |
201 |
agcatggtcccataacccactcacc |
225 |
Q |
| |
|
|| |||||||| ||||| |||||| |
|
|
| T |
19796576 |
tgcttggtcccaaaaccctctcacc |
19796552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 47713732 - 47713600
Alignment:
| Q |
97 |
aacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactca |
196 |
Q |
| |
|
||||||||||| |||| |||| | || || |||||||| ||||| ||||||||||||||||||||||| |||||| ||||||| || || |||| |
|
|
| T |
47713732 |
aacatgtcaccaacatatctcactactggcaacccatgtcttgacttcttcttccatgttgtccccgacactccccctgaaactctcctccgacgacttc |
47713633 |
T |
|
| Q |
197 |
aactagcatggtcccataacccactcaccaccc |
229 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||| |
|
|
| T |
47713632 |
aattagcatggtcctataacccactcaccaccc |
47713600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9085 times since January 2019
Visitors: 7893