View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1503_low_4 (Length: 521)
Name: NF1503_low_4
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 504
Target Start/End: Complemental strand, 15569305 - 15568822
Alignment:
| Q |
10 |
attattctggtagctaagattagaattagggccaaacaaggtgggttcaagtggttagcaatatagtagtttgaaccctttaaccatatgactagggttt |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15569305 |
attattctgatagctaagattagaattagggccaaacaaggtgggttcaagtggttagcaatatagtagtttgaaccctttaaccatatgactagggttt |
15569206 |
T |
|
| Q |
110 |
gaatcctattaagggaatatagannnnnnnnaagggggaataaacatttattatctattggaatttggaagagcagtttcccttcaattgatacttttat |
209 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15569205 |
gaatcctattaagggaatagagatttttttaaagggggaataaatatttattatctattggaa-------gagcagtttcccttcaattgatacttttat |
15569113 |
T |
|
| Q |
210 |
actatcatttaaaaagttaggatgggtggttttatgtttttctttgaaataaatccattaagttgctttccaattttagtcacaattttatatggatttt |
309 |
Q |
| |
|
| |||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15569112 |
a---tcatttaaaaagttag-atggatggttttatgttttgctttgaaataaatccattaagttgctttccaattttagtcacaattttatatagatttt |
15569017 |
T |
|
| Q |
310 |
gtcccacgttatcattctagaccattttcatattataataaaataaaaaccaaatttgnnnnnnnncttgactgaaaaatgaattttgtttaggataatt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
15569016 |
gtcccacgttatcattctagaccattttcatattataataaaataaaaaccaaatgtgttttttttcttgactgaaaaatgaattttgtttaggataatt |
15568917 |
T |
|
| Q |
410 |
aatcatccactagcgtgttatataaaatatatatagctagtcggtccaatgaaggacccttcttttgattggtcttattgccattgtctccaaat |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15568916 |
aatcatccactagcgtgttatataaaatatatatagctagtcggtccaatgaaggacccttcttttgattggtcttattgccattgtctccaaat |
15568822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14054 times since January 2019
Visitors: 8375