View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565-INSERTION-1 (Length: 700)
Name: NF1565-INSERTION-1
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1565-INSERTION-1 |
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[»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 227 - 699
Target Start/End: Original strand, 42793902 - 42794374
Alignment:
Q |
227 |
tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
326 |
Q |
|
|
|||||||||||| | | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
42793902 |
tgttgggatttcccttgcttgcccatgttgtgggaatgatgatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
42794001 |
T |
|
Q |
327 |
attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatggttgggacaagcacatcta |
426 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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|
T |
42794002 |
attgttccttccgactttataactaacttcttttcctttgattgtagggattggttctccaataaccttaagagaaaaatggttgggataagcacatcta |
42794101 |
T |
|
Q |
427 |
gatggcagaccacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaataatccaaatat |
526 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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T |
42794102 |
gatggcagaccacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatatttgaagcggatttccaaaggccgaataatccaaatat |
42794201 |
T |
|
Q |
527 |
actaatccaaacattcgttagagatattgaagactacaacttggagcactttcatagagggcctaaggtgacggacactatctacataggatggaaacga |
626 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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T |
42794202 |
actaatccaaacattcgttagagatattgaagactacaacttggagcactttcatagagggcctaaggtgacgcacactatctacataggatggaaacga |
42794301 |
T |
|
Q |
627 |
cctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtg |
699 |
Q |
|
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
42794302 |
cctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtg |
42794374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 227 - 699
Target Start/End: Original strand, 46427972 - 46428444
Alignment:
Q |
227 |
tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
326 |
Q |
|
|
||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
46427972 |
tgttgggatttctccgacttgcccatgttgtgggaatgatgattaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
46428071 |
T |
|
Q |
327 |
attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatggttgggacaagcacatcta |
426 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
T |
46428072 |
attgttccttccgactttataactaacttcttttcctttgattgtggggattggttttccaataaccttaagagaaaaatggttgggacaaacacatcta |
46428171 |
T |
|
Q |
427 |
gatggcagaccacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaataatccaaatat |
526 |
Q |
|
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
46428172 |
gatggcagaccacctttatgactatgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaataatccaaatat |
46428271 |
T |
|
Q |
527 |
actaatccaaacattcgttagagatattgaagactacaacttggagcactttcatagagggcctaaggtgacggacactatctacataggatggaaacga |
626 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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T |
46428272 |
actaatccaaacattcgttagagatattgaagactacaacttggagcactttcatagagggcctaaggtgacagacactatctacataggatggaaacga |
46428371 |
T |
|
Q |
627 |
cctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtg |
699 |
Q |
|
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
46428372 |
cctcaggaaggttgaatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtg |
46428444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 227 - 699
Target Start/End: Complemental strand, 54813031 - 54812559
Alignment:
Q |
227 |
tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
326 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
54813031 |
tgttgggatttctcctacttgcccatgttgtgggaatgatgatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
54812932 |
T |
|
Q |
327 |
attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatggttgggacaagcacatcta |
426 |
Q |
|
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
T |
54812931 |
attgttccttccaacgttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatggttgggacaagcacatgta |
54812832 |
T |
|
Q |
427 |
gatggcagaccacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaataatccaaatat |
526 |
Q |
|
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
54812831 |
gatggcagaccacctttatgactacgtgttgatatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaataatccaaatat |
54812732 |
T |
|
Q |
527 |
actaatccaaacattcgttagagatattgaagactacaacttggagcactttcatagagggcctaaggtgacggacactatctacataggatggaaacga |
626 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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T |
54812731 |
actaatccaaacattcgttagagatattgaagactacaacttggagctctttcatagagggcctaagttgacggacactatctacataggatggaaacga |
54812632 |
T |
|
Q |
627 |
cctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtg |
699 |
Q |
|
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
54812631 |
cctcaggaaggttggatcaagctcaacggcgacggtgcctgcaaggatatgggtcatatttccggttgtggtg |
54812559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 476 - 700
Target Start/End: Complemental strand, 43912791 - 43912562
Alignment:
Q |
476 |
gaacaagactatctttgaagcggatttccaaaggccgaataatccaaatatactaatccaaacattcgttagagatattgaagactacaacttggagcac |
575 |
Q |
|
|
|||||| ||||||||||||| |||||| |||||| ||| |||| ||||||| ||||||||| ||||||||| |||||||||||||||||||||||| || |
|
|
T |
43912791 |
gaacaaaactatctttgaagttgatttctaaaggctgaacaatctaaatatattaatccaaagattcgttagggatattgaagactacaacttggagtac |
43912692 |
T |
|
Q |
576 |
tttcatagagggcctaaggtgacggac-----actatctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaa |
670 |
Q |
|
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |
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|
T |
43912691 |
cttcatagagggcctaaggtgaaggaagtaatactatctacataggatggaaacgacctcagaaaggttggatcaagctcaacagtgacgatgcctgcaa |
43912592 |
T |
|
Q |
671 |
ggatatgggtcatatttccggttgtggtga |
700 |
Q |
|
|
||||||||||||||||| |||||||||||| |
|
|
T |
43912591 |
ggatatgggtcatattttcggttgtggtga |
43912562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 237 - 502
Target Start/End: Complemental strand, 27156939 - 27156674
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
|||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||||| | || || |||||||||||| | || ||||| | |
|
|
T |
27156939 |
tctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatctacgctacccaggtatggctttacatcgttccat |
27156840 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaa-gagaaaaatggttgggacaagcacatctagatggcaga |
435 |
Q |
|
|
|| ||||||||||| |||||||| |||||||| ||||||||||| | ||||||||| || ||||| || ||||||| | ||| | || ||| ||| |
|
|
T |
27156839 |
atgattttataactaatttcttttcttttgattgcagggattggttcttcaataacctcaacaagaaagat-attgggacgaacactttaagttggaaga |
27156741 |
T |
|
Q |
436 |
ccacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggattt |
502 |
Q |
|
|
|| || ||||| || |||||||| |||||||| |||||||| || ||||| |||||||| ||||| |
|
|
T |
27156740 |
taactttcatgacgacatgttggtacttgtggaagtggaggaataaaactatttttgaagctgattt |
27156674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 237 - 394
Target Start/End: Original strand, 54346161 - 54346318
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
||||||| |||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||||| || || || |||||||||||| | || ||||| | |
|
|
T |
54346161 |
tctcctaattgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacccaggtatggctttacatcgttccat |
54346260 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
394 |
Q |
|
|
|| ||||||||||| |||||||| || |||| ||||||||||| | ||||||||| |
|
|
T |
54346261 |
atgattttataactaatttcttttctttcaattgcagggattggttcttcaataacct |
54346318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 679
Target Start/End: Original strand, 54346530 - 54346603
Alignment:
Q |
606 |
atctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
||||| ||||| ||||| || |||| ||||||||||||||||| || || || ||||| |||||||||||||| |
|
|
T |
54346530 |
atctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatggg |
54346603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 227 - 699
Target Start/End: Complemental strand, 1223744 - 1223273
Alignment:
Q |
227 |
tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
326 |
Q |
|
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
T |
1223744 |
tgttgggatttctcctacttgcccatgttgtggaaatgatgatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcatgtatggcttcat |
1223645 |
T |
|
Q |
327 |
attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatggttgggacaagcacatcta |
426 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
T |
1223644 |
attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaatgaccttaagagaaaaatggttgggacaagcacatcta |
1223545 |
T |
|
Q |
427 |
gatggcagaccacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaataatccaaatat |
526 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
1223544 |
gatggcagaccacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaataatccaaatat |
1223445 |
T |
|
Q |
527 |
actaatccaaacattcgttagagatattgaagactacaacttggagcactttcatagagggcctaaggtgacggacactatctacataggatggaaacga |
626 |
Q |
|
|
||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
T |
1223444 |
actaa-ccaaacatttgttagagatattgaagactacaacctggagctctttcatagagggcctaaggttacagacactatctacataggatggaaacga |
1223346 |
T |
|
Q |
627 |
cctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtg |
699 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
T |
1223345 |
cctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccgattgtggtg |
1223273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 898311 - 898144
Alignment:
Q |
7 |
agctgagtatagagggtttcaaaattaagagtgctacattttgtttttgatcccaagagaatatcaactatcgatgagttgaacaatgcctttagttttg |
106 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
898311 |
agctgagtatagagggtttcaaaattaagagtgctacattttgtttttgatcccaacagaatatcaactatcgatgagttgaacaatgcctttagttttg |
898212 |
T |
|
Q |
107 |
ggtatagcgaaagagggatcatcaaaatttaccctcactagtgcattgcaagactttttgaatgtccc |
174 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
898211 |
ggtatagcgaaagagggatcatcaaaatttaccctcactagtgcattgcaagactttttgaatgtccc |
898144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 1194609 - 1194549
Alignment:
Q |
111 |
tagcgaaagagggatcatcaaaatttaccctcactagtgcattgcaagactttttgaatgt |
171 |
Q |
|
|
|||| |||||||||||||||||||||||||| |||||||||||| || ||||||||||||| |
|
|
T |
1194609 |
tagcaaaagagggatcatcaaaatttaccctgactagtgcattggaaaactttttgaatgt |
1194549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 898126 - 898092
Alignment:
Q |
195 |
tcaactttgacatcaaagtaaaaagaatcagttgt |
229 |
Q |
|
|
||||||||||||||||||||||||||||||||||| |
|
|
T |
898126 |
tcaactttgacatcaaagtaaaaagaatcagttgt |
898092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 1183853 - 1183793
Alignment:
Q |
111 |
tagcgaaagagggatcatcaaaatttaccctcactagtgcattgcaagactttttgaatgt |
171 |
Q |
|
|
|||| ||||||||||||| |||||||| ||| |||| ||||||| || ||||||||||||| |
|
|
T |
1183853 |
tagcaaaagagggatcatgaaaatttaacctgactaatgcattggaaaactttttgaatgt |
1183793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 295
Target Start/End: Original strand, 26207961 - 26208004
Alignment:
Q |
252 |
tgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtga |
295 |
Q |
|
|
||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
T |
26207961 |
tgttgtgggaatgcagatgagactgtccttcatgtgcttcgtga |
26208004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 227 - 688
Target Start/End: Original strand, 24472864 - 24473325
Alignment:
Q |
227 |
tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
326 |
Q |
|
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
24472864 |
tgtttggatttctcctacttgcccatgttgtgggaatgatgatgaaactgtccttcacgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
24472963 |
T |
|
Q |
327 |
attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatggttgggacaagcacatcta |
426 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
24472964 |
attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatggttgggacaagcacatcta |
24473063 |
T |
|
Q |
427 |
gatggcagaccacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaataatccaaatat |
526 |
Q |
|
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
T |
24473064 |
gatggcataccacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatatttgaagcggatttccaaaggccgaataatccaaatat |
24473163 |
T |
|
Q |
527 |
actaatccaaacattcgttagagatattgaagactacaacttggagcactttcatagagggcctaaggtgacggacactatctacataggatggaaacga |
626 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
T |
24473164 |
actaatccaaacattcgttagagatattgaagactacaacttggagcactttcatagagggcctaaggtgacggacattatctacataggatggaaacaa |
24473263 |
T |
|
Q |
627 |
cctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttc |
688 |
Q |
|
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
T |
24473264 |
cctcaggatagttggatcaagctcaacagcgacgatgcctgcaaggatatgggtcatatttc |
24473325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 591 - 677
Target Start/End: Complemental strand, 24472740 - 24472654
Alignment:
Q |
591 |
aaggtgacggacactatctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatg |
677 |
Q |
|
|
||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
24472740 |
aaggtgacggacattatctacataggatggaaacaacctcaggatagttggatcaagctcaacagcgacggtgcctgcaaggatatg |
24472654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 237 - 394
Target Start/End: Complemental strand, 8020517 - 8020360
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
||||||| |||||| | |||||| ||||| ||||||||||| |||||||||||||| |||||||| || || || |||||||||||| | || ||||| | |
|
|
T |
8020517 |
tctcctaattgcccgtattgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacccaggtatggctttacatcgttccat |
8020418 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
394 |
Q |
|
|
|| ||||||||||| |||||||| || |||| ||||||||||| | ||||||||| |
|
|
T |
8020417 |
atgattttataactaatttcttttctttcaattgcagggattggttcttcaataacct |
8020360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 237 - 394
Target Start/End: Complemental strand, 29214501 - 29214344
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| || || |||||||||||| || | | ||||||| |
|
|
T |
29214501 |
tctcctacttgcctgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgtgattgcatccacgctactcaggtatggatttacaccgttcctt |
29214402 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
394 |
Q |
|
|
| | ||||||||||| | ||||| || ||| ||||||||||| | ||||||||| |
|
|
T |
29214401 |
ctaattttataactaattgtttttctttcaattacagggattggttcttcaataacct |
29214344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 679
Target Start/End: Complemental strand, 29214190 - 29214059
Alignment:
Q |
548 |
agatattgaagactacaacttggagcactttcatagagggcctaaggtgacggacactatctacataggatggaaacgacctcaggaaggttggatcaag |
647 |
Q |
|
|
|||||||||||||| || |||||||| ||||||| || || ||| ||| ||| | |||||| ||||| ||||| || |||| ||||||||||||||| |
|
|
T |
29214190 |
agatattgaagactgtaatttggagcattttcatattggtccaaagttgaaggaaattatctatataggttggaagcggtctcatgaaggttggatcaag |
29214091 |
T |
|
Q |
648 |
ctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
||||| || || ||||| |||||| ||||||| |
|
|
T |
29214090 |
ctcaatagtgatggtgcttgcaagaatatggg |
29214059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 31047546 - 31047647
Alignment:
Q |
227 |
tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
326 |
Q |
|
|
|||||||||||| || |||| | ||||||||| ||||| ||||||| ||| ||||||||||| | | |||||||||||| ||||| ||||| |||||| |
|
|
T |
31047546 |
tgttgggatttcacccacttatcaatgttgtggtaatgatgatgaaattgttcttcatgtgctccataattgcattcatgtaactcgggtataacttcat |
31047645 |
T |
|
Q |
327 |
at |
328 |
Q |
|
|
|| |
|
|
T |
31047646 |
at |
31047647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 679
Target Start/End: Complemental strand, 28395757 - 28395677
Alignment:
Q |
599 |
ggacactatctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
||||| |||||||||| ||||||| | ||| || |||||||||||||||||||| || || || || |||||||||||||| |
|
|
T |
28395757 |
ggacattatctacatatgatggaagcaaccacaagaaggttggatcaagctcaatagtgatggcgcatgcaaggatatggg |
28395677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 394
Target Start/End: Original strand, 25712892 - 25713049
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
|||||||||| ||| ||||| | ||||| |||||||| || ||| ||||| ||||||||| ||| || |||||||| |||||||| | || ||||||| |
|
|
T |
25712892 |
tctcctactttcccgagttgtcgaaatgaagatgaaaccgttcttaatgtgattcgtgattccatccacacaactcagatatggctttacatcgttcctt |
25712991 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
394 |
Q |
|
|
|| ||||||| | | || ||||| | ||||| ||||||||||| | ||||||||| |
|
|
T |
25712992 |
atgattttataaattatttattttcttccgattgcagggattggttcttcaataacct |
25713049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 679
Target Start/End: Original strand, 25713261 - 25713334
Alignment:
Q |
606 |
atctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
||||| ||||| ||||| || ||||| ||||||||||||||||||||||| || | ||| |||||||| ||||| |
|
|
T |
25713261 |
atctatataggttggaagcggcctcaagaaggttggatcaagctcaacagtgatgatgcttgcaaggacatggg |
25713334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 322
Target Start/End: Complemental strand, 38111444 - 38111362
Alignment:
Q |
240 |
cctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggct |
322 |
Q |
|
|
|||||||| || ||||||| || ||||||||||| ||| ||||||| ||||||||||| | || || |||||||||||||| |
|
|
T |
38111444 |
cctacttgtccttgttgtgcgagagaggatgaaacagtcattcatgtccttcgtgattgtgtgcacgctactcaggtatggct |
38111362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 679
Target Start/End: Complemental strand, 8020148 - 8020075
Alignment:
Q |
606 |
atctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
||||| ||||| ||||| || |||| ||||||||||||||||| || || || ||||| |||||||||||||| |
|
|
T |
8020148 |
atctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatggg |
8020075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 679
Target Start/End: Original strand, 48618729 - 48618802
Alignment:
Q |
606 |
atctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
||||| ||||| ||||| || ||||| ||||||||||||||||| || || || ||||| ||||||| |||||| |
|
|
T |
48618729 |
atctatataggttggaagcggcctcaagaaggttggatcaagcttaatagtgatggtgcttgcaaggttatggg |
48618802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 45753436 - 45753388
Alignment:
Q |
252 |
tgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgca |
300 |
Q |
|
|
|||||||| |||| || |||||||| |||||||||||||||||||||| |
|
|
T |
45753436 |
tgttgtggaaatgccgacgaaactgttcttcatgtgcttcgtgattgca |
45753388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 227 - 699
Target Start/End: Original strand, 44145135 - 44145593
Alignment:
Q |
227 |
tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
326 |
Q |
|
|
||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
44145135 |
tgttgggatttctccaacttgcccatgttgtgggaatgatgatgaaattgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
44145234 |
T |
|
Q |
327 |
attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatggttgggacaagcacatcta |
426 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
T |
44145235 |
attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaatatggttgggacaagcacattta |
44145334 |
T |
|
Q |
427 |
gatggcagaccacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaataatccaaatat |
526 |
Q |
|
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
44145335 |
gatggcataccacctttatgactacgtgttgttatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaa------------ |
44145422 |
T |
|
Q |
527 |
actaatccaaacattcgttagagatattgaagactacaacttggagcactttcatagagggcctaaggtgacggacactatctacataggatggaaacga |
626 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
44145423 |
--taatccaaacattcgttagagatattgaagactacaacttggagctctttcatagagggcctaaggtgacggacactatctacataggatggaaacga |
44145520 |
T |
|
Q |
627 |
cctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtg |
699 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
44145521 |
cctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtg |
44145593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 237 - 394
Target Start/End: Complemental strand, 26617497 - 26617340
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
|||||||||||||| |||||||| ||||| ||||||||| | |||||||||||||| | |||||| |||| ||||||||||||||| | || ||||| | |
|
|
T |
26617497 |
tctcctacttgcccgtgttgtggaaatgaagatgaaactattcttcatgtgcttcgcggttgcatctatgctactcaggtatggctttacatcgttccat |
26617398 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
394 |
Q |
|
|
|| ||||||||||| |||||||| || ||||| | ||||||||| | ||||||||| |
|
|
T |
26617397 |
atgattttataactaatttcttttctttcgattgcatggattggttcttcaataacct |
26617340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 616 - 674
Target Start/End: Complemental strand, 38560962 - 38560904
Alignment:
Q |
616 |
gatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggat |
674 |
Q |
|
|
||||| ||| ||||||||||||||||||||| |||| ||| |||||||||||||||||| |
|
|
T |
38560962 |
gatggtaacaacctcaggaaggttggatcaaactcagcagtgacggtgcctgcaaggat |
38560904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 606 - 676
Target Start/End: Original strand, 1635793 - 1635863
Alignment:
Q |
606 |
atctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatat |
676 |
Q |
|
|
||||| ||||| ||||| || ||||| ||||||||||||||||| || || || ||||| ||||||||||| |
|
|
T |
1635793 |
atctatataggttggaagcggcctcaagaaggttggatcaagcttaatagtgatggtgcttgcaaggatat |
1635863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 327 - 699
Target Start/End: Complemental strand, 22065885 - 22065512
Alignment:
Q |
327 |
attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatggttgggacaagcacatcta |
426 |
Q |
|
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
22065885 |
attgttcctttcgactttataactaacttcttttcctttgattgcagggattggttttccaataaccttaagagaaaaatggttgggacaagcacatcta |
22065786 |
T |
|
Q |
427 |
gatggcagaccacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaataatcc-aaata |
525 |
Q |
|
|
|||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
T |
22065785 |
gatgacataccacctttatgactatgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaataatccaaaata |
22065686 |
T |
|
Q |
526 |
tactaatccaaacattcgttagagatattgaagactacaacttggagcactttcatagagggcctaaggtgacggacactatctacataggatggaaacg |
625 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
T |
22065685 |
tactaatccaaacattcgttagagatattgaagactacaacttggagctctttcatagagggcctaaggtgacgaacactatctacataggatggaaacg |
22065586 |
T |
|
Q |
626 |
acctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtg |
699 |
Q |
|
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
T |
22065585 |
acctcaggaaggttggatcaagctcaacagtgacggtgcctgcaaggatatgggtcatattttcggttgtggtg |
22065512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 237 - 394
Target Start/End: Original strand, 5308068 - 5308225
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
|||||||||||||| |||||||| ||||| ||||||| ||| |||||||||||||| |||||||| || || || |||||||||||| | || ||||| | |
|
|
T |
5308068 |
tctcctacttgcccgtgttgtggaaatgaagatgaaaatgttcttcatgtgcttcgcgattgcatccacgctacccaggtatggctttacatcgttccat |
5308167 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
394 |
Q |
|
|
|| ||||||||||| |||||||| || |||| ||||||||||| | ||||||||| |
|
|
T |
5308168 |
atgattttataactaatttcttttctttcaattgcagggattggttcttcaataacct |
5308225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 237 - 394
Target Start/End: Original strand, 23949124 - 23949281
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
||||||| |||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||||| || || || |||||||||||| | || ||||| | |
|
|
T |
23949124 |
tctcctaattgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacccaggtatggctttacatcgttccat |
23949223 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
394 |
Q |
|
|
|| ||||||||||| |||||||| || |||| ||||||||||| | ||||||||| |
|
|
T |
23949224 |
atgattttataactaatttcttttctttcaattgcagggattggttcttcaataacct |
23949281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 237 - 394
Target Start/End: Complemental strand, 23085684 - 23085527
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
|||||||||||| | |||| ||| ||||| ||||||| ||| |||||||||||||| |||||||| | || ||||||||||||||| | |||||||| | |
|
|
T |
23085684 |
tctcctacttgcacgtgttatggaaatgaagatgaaattgttcttcatgtgcttcgcgattgcatctacgctactcaggtatggctttacattgttccat |
23085585 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
394 |
Q |
|
|
|| ||||||||||| |||||||| || ||||| | ||||||||| | ||||||||| |
|
|
T |
23085584 |
atgattttataactaatttcttttctttcgattgcaaggattggttcttcaataacct |
23085527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 237 - 394
Target Start/End: Original strand, 23722713 - 23722870
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
||||||||||| || |||||||| ||||| ||||||| ||| |||||||||||||| |||||||| || || || || ||||||||| | || ||||| | |
|
|
T |
23722713 |
tctcctacttgtccgtgttgtggaaatgaagatgaaattgttcttcatgtgcttcgcgattgcatccacgctacccaagtatggctttacatcgttccat |
23722812 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
394 |
Q |
|
|
|| ||||||||||| |||||||| || ||||| ||||||||||| | ||||||||| |
|
|
T |
23722813 |
atgattttataactaatttcttttctttcgattgcagggattggttcttcaataacct |
23722870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 274 - 394
Target Start/End: Complemental strand, 50953304 - 50953184
Alignment:
Q |
274 |
ctgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttccttccgactttataactaacttcttttcctttgattgtag |
373 |
Q |
|
|
|||| |||||||||||| ||||||||||| |||| | || ||||||||| | || ||||| | || ||||||||||| |||||||| || ||||| || |
|
|
T |
50953304 |
ctgttcttcatgtgctttgtgattgcatttatgctgcccatgtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcag |
50953205 |
T |
|
Q |
374 |
ggattggttttccaataacct |
394 |
Q |
|
|
||||||||| | ||||||||| |
|
|
T |
50953204 |
ggattggttcttcaataacct |
50953184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 679
Target Start/End: Complemental strand, 23085315 - 23085242
Alignment:
Q |
606 |
atctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
||||| ||||| ||||| || ||||| ||||||||||||||||| || || || ||||| |||||||||||||| |
|
|
T |
23085315 |
atctatataggttggaagcggcctcaagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatggg |
23085242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 679
Target Start/End: Original strand, 5308437 - 5308510
Alignment:
Q |
606 |
atctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
||||| ||||| ||||| || |||| ||||||||||||||||| || || || ||||| |||||||||||||| |
|
|
T |
5308437 |
atctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatggg |
5308510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 679
Target Start/End: Original strand, 23949493 - 23949566
Alignment:
Q |
606 |
atctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
||||| ||||| ||||| || |||| ||||||||||||||||| || || || ||||| |||||||||||||| |
|
|
T |
23949493 |
atctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatggg |
23949566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 679
Target Start/End: Complemental strand, 50952972 - 50952899
Alignment:
Q |
606 |
atctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
||||| ||||| ||||| || |||| ||||||||||||||||| || || || ||||| |||||||||||||| |
|
|
T |
50952972 |
atctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatggg |
50952899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 227 - 699
Target Start/End: Original strand, 18882796 - 18883268
Alignment:
Q |
227 |
tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat |
326 |
Q |
|
|
||||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||||||| |||| || ||||||||||||||||||||||||||| |
|
|
T |
18882796 |
tgttgggatttttcctacttgcccatgttgtgggaataatgatgaaaatgtccttcatgtgctttgtgactgtattcatgcaactcaggtatggcttcat |
18882895 |
T |
|
Q |
327 |
attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatggttgggacaagcacatcta |
426 |
Q |
|
|
|||||||| || || |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| |
|
|
T |
18882896 |
attgttccctctgattttataactaacttcttttcctttgactgtagggattggtttttcaataaccttaagaggaaaatggttgggacgagcacatcta |
18882995 |
T |
|
Q |
427 |
gatggcagaccacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggatttccaaaggccgaataatccaaatat |
526 |
Q |
|
|
|||| ||||||||||| ||||||| || | ||||||||||||||||| |||||| ||||||||| || | |||||||||||||| |||||||||||||| |
|
|
T |
18882996 |
gatgacagaccaccttcatgactatgtactagtatttgtggaaatggaagaacaaaactatctttaaacctgatttccaaaggccaaataatccaaatat |
18883095 |
T |
|
Q |
527 |
actaatccaaacattcgttagagatattgaagactacaacttggagcactttcatagagggcctaaggtgacggacactatctacataggatggaaacga |
626 |
Q |
|
|
| || || | | |||||||| ||||||||||||||| |||||||||||| |||||| |||||||||||||| ||| ||||||| |||||||||||||||| |
|
|
T |
18883096 |
attagtctagagattcgttaaagatattgaagactaaaacttggagcaccttcatatagggcctaaggtgaaggagactatcttcataggatggaaacga |
18883195 |
T |
|
Q |
627 |
cctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtg |
699 |
Q |
|
|
|||||||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||| |
|
|
T |
18883196 |
cctcaggaaggttggatcaagctcaacaacgacggtgcctccaaggatctaggtcatatttccggttgtggtg |
18883268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 555 - 687
Target Start/End: Complemental strand, 4560769 - 4560637
Alignment:
Q |
555 |
gaagactacaacttggagcactttcatagagggcctaaggtgacggacactatctacataggatggaaacgacctcaggaaggttggatcaagctcaaca |
654 |
Q |
|
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
T |
4560769 |
gaagactacaacttggagcactttcataaagggcctaaggtggcggacactatctacataggatggaaacgacctcaggaaggttggatcaagctcgaca |
4560670 |
T |
|
Q |
655 |
gcgacggtgcctgcaaggatatgggtcatattt |
687 |
Q |
|
|
|||| |||||||||||||||||||||||||||| |
|
|
T |
4560669 |
gcgatggtgcctgcaaggatatgggtcatattt |
4560637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 679
Target Start/End: Complemental strand, 34081200 - 34081069
Alignment:
Q |
548 |
agatattgaagactacaacttggagcactttcatagagggcctaaggtgacggacactatctacataggatggaaacgacctcaggaaggttggatcaag |
647 |
Q |
|
|
|||||||||||| | ||||||||||| |||||| || || ||| ||| ||| | ||||| ||||| ||||| || |||| ||||||||||||||| |
|
|
T |
34081200 |
agatattgaagattgtaacttggagcatattcatattggtccaaagttgaaggaaatcatctatataggttggaagcggcctcgagaaggttggatcaag |
34081101 |
T |
|
Q |
648 |
ctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
|| || || || ||||| |||||||||||||| |
|
|
T |
34081100 |
cttaatagtgatggtgcttgcaaggatatggg |
34081069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 322
Target Start/End: Original strand, 14024272 - 14024354
Alignment:
Q |
240 |
cctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggct |
322 |
Q |
|
|
|||||||| || ||||||| || ||||||||||| ||| ||||||| ||||||||||| | || || |||||||||||||| |
|
|
T |
14024272 |
cctacttgtccttgttgtgcgagagaggatgaaacagtcattcatgtccttcgtgattgtgtgcacgctactcaggtatggct |
14024354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 482 - 699
Target Start/End: Complemental strand, 47598118 - 47597901
Alignment:
Q |
482 |
gactatctttgaagcggatttccaaaggccgaataatccaaatatactaatccaaacattcgttagagatattgaagactacaacttggagcactttcat |
581 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
47598118 |
gactatctttgaagcggatttccaaaggccgaataatccaaatatactaatccaaacattcgttagagatattgaagactacaacttggagcactttcat |
47598019 |
T |
|
Q |
582 |
agagggcctaaggtgacggacactatctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtc |
681 |
Q |
|
|
||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
T |
47598018 |
agagggcctaaggtgacagacattatctacataggatggaaacgacctcaagaaggttggatcaaactcaacagcgacggtgcctgcaaggatatgggtc |
47597919 |
T |
|
Q |
682 |
atatttccggttgtggtg |
699 |
Q |
|
|
|||||||||||||||||| |
|
|
T |
47597918 |
atatttccggttgtggtg |
47597901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 237 - 394
Target Start/End: Complemental strand, 36895189 - 36895032
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
|||||||||||||| |||||||| ||||| ||||||| ||| ||||||||||||| |||||||| | || ||||||||||||||| | || ||||| | |
|
|
T |
36895189 |
tctcctacttgcccgtgttgtggaaatgaagatgaaattgtttttcatgtgcttcgcgattgcatctacgctactcaggtatggctttacatcgttccat |
36895090 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
394 |
Q |
|
|
|| ||| ||||||| |||||||| || ||||| ||||||||||| | ||||||||| |
|
|
T |
36895089 |
atgattttgtaactaatttcttttctttcgattgcagggattggttcttcaataacct |
36895032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 237 - 394
Target Start/End: Complemental strand, 34390578 - 34390421
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||||| | || || || ||||||||| | || ||||| | |
|
|
T |
34390578 |
tctcctacttgcctgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatctacgctacccatgtatggctttacatcgttccat |
34390479 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
394 |
Q |
|
|
|| ||||||||||| |||||||| || ||||| | ||||||||| | ||||||||| |
|
|
T |
34390478 |
atgattttataactaatttcttttctttcgattgcaaggattggttcttcaataacct |
34390421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 322
Target Start/End: Original strand, 1368771 - 1368853
Alignment:
Q |
240 |
cctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggct |
322 |
Q |
|
|
|||||||| || ||||||| || ||||||||||| ||| ||||||| ||||||||||| | || || |||||||||||||| |
|
|
T |
1368771 |
cctacttgtccttgttgtgcgagagaggatgaaacagtcattcatgtccttcgtgattgtgtgcacgctactcaggtatggct |
1368853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 605 - 679
Target Start/End: Complemental strand, 34390210 - 34390136
Alignment:
Q |
605 |
tatctacataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
|||||| ||||| ||||| || |||| ||||||||||||||||| || || || ||||| |||||||||||||| |
|
|
T |
34390210 |
tatctatataggttggaagcggcctcgagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatggg |
34390136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 237 - 503
Target Start/End: Complemental strand, 40197159 - 40196893
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
|||||||||||||| |||||||| ||||| ||||||| ||| |||| ||||||| |||||||||| |||||||||| |||||||||| | || || ||| |
|
|
T |
40197159 |
tctcctacttgcccgtgttgtggaaatgaagatgaaattgttcttcgtgtgctttgtgattgcatccatgcaactcgggtatggctttacatcctttctt |
40197060 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatggttgggacaagcacatctagatggcagac |
436 |
Q |
|
|
| || ||||||||||| |||||||| |||||||| ||||||||||| | ||||||||| || | ||| |||||||| | ||| | || ||| |||| |
|
|
T |
40197059 |
ctgattttataactaatttcttttcttttgattgcagggattggttcttcaataacctcaacaagaaagacgttgggacgaacactttaagttggaagac |
40196960 |
T |
|
Q |
437 |
cacctttatgactacgtgttggtatttgtggaaatggaggaacaagactatctttgaagcggatttc |
503 |
Q |
|
|
|| || ||||| | ||||||||| |||||||| |||||||| || ||||| |||||||| |||||| |
|
|
T |
40196959 |
aactttcatgacgatgtgttggtacttgtggaagtggaggaataaaactatttttgaagctgatttc |
40196893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 237 - 394
Target Start/End: Complemental strand, 7305854 - 7305697
Alignment:
Q |
237 |
tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt |
336 |
Q |
|
|
|||||||||||||| |||||||| ||||| ||||||||||| ||||| |||||||| |||||||| | || ||||||||||||||| | || ||||| | |
|
|
T |
7305854 |
tctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcacgtgcttcgcgattgcatctacgctactcaggtatggctttacatcgttccat |
7305755 |
T |
|
Q |
337 |
ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct |
394 |
Q |
|
|
|| ||||||||||| |||||||| || ||||| ||||||||||| | ||||||||| |
|
|
T |
7305754 |
atgattttataactaatttcttttctttcgattgcagggattggttcttcaataacct |
7305697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 275 - 622
Target Start/End: Complemental strand, 26382006 - 26381659
Alignment:
Q |
275 |
tgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttccttccgactttataactaacttcttttcctttgattgtagg |
374 |
Q |
|
|
|||| |||| ||| ||| ||| |||||||| ||||| || |||||| |||||||||||||||| || ||||||| ||| || ||||| |||||||| ||| |
|
|
T |
26382006 |
tgtcattcacgtgattcatgactgcattcacgcaacccaagtatggtttcatattgttccttctgattttataaataatttattttcttttgattgcagg |
26381907 |
T |
|
Q |
375 |
gattggttttccaataaccttaagagaaaaatggttgggacaagcacatctagatggcagaccacctttatgactacgtgttggtatttgtggaaatgga |
474 |
Q |
|
|
||||| ||| ||||||||| || |||||| |||||| || |||| || | ||||| |||||||| ||| | || || ||| || | ||||| || | |
|
|
T |
26381906 |
gattgaattttcaataacctcaatagaaaaggggttggaacgagcagctccaattggcataccaccttcatggcaacttgctggcatctatggaagtgaa |
26381807 |
T |
|
Q |
475 |
ggaacaagactatctttgaagcggatttccaaaggccgaataatccaaatatactaatccaaacattcgttagagatattgaagactacaacttggagca |
574 |
Q |
|
|
| ||||| |||||||||||||| |||| || ||||| || || |||||| || | || | ||||| | ||||||||| |||| ||||| || || |
|
|
T |
26381806 |
gcaacaaaactatctttgaagctaattttcagaggccaaacaacccaaatttaatgattaagcgtttcgtcaaagatattgaggactgtaacttagaaca |
26381707 |
T |
|
Q |
575 |
ctttcatagagggcctaaggtgacggacactatctacataggatggaa |
622 |
Q |
|
|
||||||| || | |||| ||| ||| |||||||||||||||||||| |
|
|
T |
26381706 |
tcttcatagtggtcataagttgaaggaaactatctacataggatggaa |
26381659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 42161834 - 42161748
Alignment:
Q |
234 |
atttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatgg |
320 |
Q |
|
|
||||| |||||||| || ||||||||||||| |||| || || ||||||||||||||||||||| |||||| ||||||||||| |
|
|
T |
42161834 |
atttcgcctacttgtccttgttgtgggaatgcaaatgagaccgttattcatgtgcttcgtgattgcaggcatgcatctcaggtatgg |
42161748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 679
Target Start/End: Complemental strand, 7305465 - 7305413
Alignment:
Q |
627 |
cctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatggg |
679 |
Q |
|
|
||||| ||||||||||||||||| || || || ||||| |||||||||||||| |
|
|
T |
7305465 |
cctcaagaaggttggatcaagcttaatagtgatggtgcttgcaaggatatggg |
7305413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 548 - 680
Target Start/End: Complemental strand, 40196849 - 40196717
Alignment:
Q |
548 |
agatattgaagactacaacttggagcactttcatagagggcctaaggtgacggacactatctacataggatggaaacgacctcaggaaggttggatcaag |
647 |
Q |
|
|
|||||||||||| | ||||||||||| |||||| || || ||| ||| |||| ||||| ||||| ||||| || |||| ||||||||||||||| |
|
|
T |
40196849 |
agatattgaagaatgtaacttggagcatcttcatattggtccaaagttgaaagacatcatctatataggttggaagcggcctcgagaaggttggatcaag |
40196750 |
T |
|
Q |
648 |
ctcaacagcgacggtgcctgcaaggatatgggt |
680 |
Q |
|
|
||||||| | ||||| |||||| |||||||| |
|
|
T |
40196749 |
ctcaacaatggtggtgcttgcaagaatatgggt |
40196717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 612 - 700
Target Start/End: Original strand, 355705 - 355793
Alignment:
Q |
612 |
ataggatggaaacgacctcaggaaggttggatcaagctcaacagcgacggtgcctgcaaggatatgggtcatatttccggttgtggtga |
700 |
Q |
|
|
|||||||| || | ||| || ||||||| |||||||||||||| || ||||| |||||||||| ||||||||||| | ||||||||| |
|
|
T |
355705 |
ataggatgaaagcaaccacaagaaggttcgatcaagctcaacaatgatggtgcatgcaaggataggggtcatattttggattgtggtga |
355793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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