View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565-INSERTION-4 (Length: 293)
Name: NF1565-INSERTION-4
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565-INSERTION-4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 16542504 - 16542789
Alignment:
| Q |
8 |
taaacaatgagtacaagggggtactcaaacccttacaaaataaatctttatatgctttttaaacatacaagaggattacaataccaattagaaaacacaa |
107 |
Q |
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| T |
16542504 |
taaacaatgagtacaagggggtactcaaacccttacaaaataaatctttatatgctttttaaacatacaagaggattacaataccaattagaaaacacaa |
16542603 |
T |
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| Q |
108 |
agctagatatctctaatgaagaagcatgaccaatttccaatttctccaagaaatccacaattggctgtctttgactattatcatcttcttcctcttcaat |
207 |
Q |
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| T |
16542604 |
agctagatatctcttatgaagaagcatgaccaatttccaatttctccaacaaacccagaattggctgtctttgactattatcatcttcttcctcttcaat |
16542703 |
T |
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| Q |
208 |
ttattggtcttgtggtaacataaacccatagatcgatctccaatatgtcacaactttcatctttagtcgcaaccatttgtctagca |
293 |
Q |
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| T |
16542704 |
ttattggtcttgtggtaacataaacccatagatccatctccaatatgtcacaactttcatctttattcgcaaccatttgtctagca |
16542789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 51 - 292
Target Start/End: Original strand, 16533726 - 16533967
Alignment:
| Q |
51 |
atctttatatgctttttaaacatacaagaggattacaataccaattagaaaacacaaagctagatatctctaatgaagaagcatgaccaatttccaattt |
150 |
Q |
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| T |
16533726 |
atctttatatgctttttaaacatacaagaggattacaatattaattagaaaacacaaagctagatatctcttatgaagaagcatgaccaatttccaattt |
16533825 |
T |
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| Q |
151 |
ctccaagaaatccacaattggctgtctttgactattatcatcttcttcctcttcaatttattggtcttgtggtaacataaacccatagatcgatctccaa |
250 |
Q |
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| T |
16533826 |
ctccaacaaacccagaattggctgtctttgactattatcatcttcttcctcttcaatttattggtcttgtggtaacataaacccatagatccatctccaa |
16533925 |
T |
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| Q |
251 |
tatgtcacaactttcatctttagtcgcaaccatttgtctagc |
292 |
Q |
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| T |
16533926 |
tatgtcacaactttcatctttattcgcaaccatttgtctagc |
16533967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 16532841 - 16532892
Alignment:
| Q |
8 |
taaacaatgagtacaagggggtactcaaacccttacaaaataaatctttata |
59 |
Q |
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| T |
16532841 |
taaacaatgagtacaagggggtactcaaacccttacaaaataaatctttata |
16532892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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