View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1565_high_17 (Length: 260)
Name: NF1565_high_17
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 36332020 - 36331784
Alignment:
| Q |
8 |
acattatactaaattaaatactatacaaaccaaaatgaataaaacagtactgtctcatacattaagcttgatgaaggattattattattaatcctatgat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36332020 |
acattatactaaattaaatactatacaaaccaaaatgaataaaacagtactgtctcatacattaagcttgatgaaggattattattattaatcctatgat |
36331921 |
T |
|
| Q |
108 |
gaattccataagggacatgatgagttgaatgtcctgtctcagaaaaatcaagttctcctattctttggctcgccatgcataaatattctttagaccattc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36331920 |
gaattccataagggacatgatgagttgaatgtcctgtctcagaaaaatcaagttctcctattctttggctcgccatgcataaatattctttagaccattc |
36331821 |
T |
|
| Q |
208 |
tcatatcctataaagcaaaattcaattcacataaaca |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36331820 |
tcatatcctataaagcaaaattcaattcacataaaca |
36331784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 19275556 - 19275472
Alignment:
| Q |
103 |
atgatgaattccataagggacatgatgagttgaatgtcctgtctcagaaaaatcaagttctcctattctttggctcgccatgcat |
187 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| ||||| |||| | |||||| ||| ||| |||||| ||||||||||| ||||||||| |
|
|
| T |
19275556 |
atgaagaactccataagggacatgttgacttgaaggtccagactcagacaaaccaatttctccaattctttggctagccatgcat |
19275472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 40631994 - 40632040
Alignment:
| Q |
96 |
taatcctatgatgaattccataagggacatgatgagttgaatgtcct |
142 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| | ||||||||||| |
|
|
| T |
40631994 |
taatcctatgatgaataccataaggaacatgattacttgaatgtcct |
40632040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 11013 times since January 2019
Visitors: 8059