View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565_high_21 (Length: 250)
Name: NF1565_high_21
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 8434840 - 8434652
Alignment:
| Q |
1 |
tcaaaactctcactatcaatttcatgtgaatcaaaagactcaggaagctcattcaaatcaaaaagatttttcagttttgcatgagacttcaaatcatctt |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8434840 |
tcaaaactctcactatcaatttcatatgaatcaaaagactcaggaagctcattcaaatcaaaaagatttttcagttttgcatgagacttcaaatcatctt |
8434741 |
T |
|
| Q |
101 |
cattagagttattagactccatgcccatgatatgtgagtatagatgataaccataacacatgaaagtgaatgatgaatatattaatagcttgttggcatg |
200 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8434740 |
cattagagttattagactccatgccc-----------------aagataaccataacacatgaaagtgaatgatgcatatattaatagcttgttggcatg |
8434658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 62 - 224
Target Start/End: Original strand, 3817382 - 3817543
Alignment:
| Q |
62 |
aaagatttttcagttttgcatgagacttcaaatcatcttcattagagttattagactccatgcccatgatatgtgagtatagatgataaccataacacat |
161 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
3817382 |
aaagatttttcagttttgtatgagacttcaaatcatcttcattagagttattagactccatgcccatgatatgtgagtacagaagataaccataacacat |
3817481 |
T |
|
| Q |
162 |
gaaagtgaatgatgaatatattaatagcttgttggcatgtgtgtaccccgccaaatagttttc |
224 |
Q |
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||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
3817482 |
caaagtgaatgatgcatatattaatag-ttgttggcttgtgtgtaccccgccaaatagttttc |
3817543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 27149480 - 27149345
Alignment:
| Q |
88 |
ttcaaatcatcttcattagagttattagactccatgcccatgatatgtgagtatagatgataaccataacacatgaaagtgaatgatgaatatattaata |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27149480 |
ttcaaatcatcttcattagagttattagactccatgcccatgatatgtgagtagagaagataaccataacacatgaaagtgaatgatgcatatattaata |
27149381 |
T |
|
| Q |
188 |
gcttgttggcatgtgtgtaccccgccaaatagtttt |
223 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
27149380 |
gcttgttggcctgtgtgtaccccgccaaatagtttt |
27149345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3811455 - 3811524
Alignment:
| Q |
1 |
tcaaaactctcactatcaatttcatgtgaatcaaaagactcaggaagctcattcaaatcaaaaagatttt |
70 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3811455 |
tcaaaactctcactatcaatttcatatgaatcaaaagactcaggaagctcattcaaatcaaaaagatttt |
3811524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27149531 - 27149472
Alignment:
| Q |
1 |
tcaaaactctcactatcaatttcatgtgaatcaaaagactcaggaagctcattcaaatca |
60 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
27149531 |
tcaaaactctcactatcaatttcatatgaattcaaagattcaggaagctcattcaaatca |
27149472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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