View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1565_high_28 (Length: 207)
Name: NF1565_high_28
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 22625676 - 22625843
Alignment:
| Q |
18 |
aatattacgtttgtttataagttataacttctctcttcaatttttgatcgattataattactattttttataggtacttgatctgcttaagtgttctttg |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22625676 |
aatattgcgtttgtttataagttataacttctctcttcaatttttgatcgattataattactatttgttataggtacttgatctgcttaagtgttctttg |
22625775 |
T |
|
| Q |
118 |
ctttccaagtcaactttgacagatttgttcctagagaagaaaccatcccttgagagatcaaggtttat |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22625776 |
ctttccaagtcaactttgacagatttgttcctagagaagaaaccatcccttgagagatcaaggtttat |
22625843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 22633494 - 22633327
Alignment:
| Q |
18 |
aatattacgtttgtttataagttataacttctctcttcaatttttgatcgattataattactattttttataggtacttgatctgcttaagtgttctttg |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22633494 |
aatattgcgtttgtttataagttataacttctctcttcaatttttgatcgattacaattactattttttataggtacttgatctgcttaagtgttctttg |
22633395 |
T |
|
| Q |
118 |
ctttccaagtcaactttgacagatttgttcctagagaagaaaccatcccttgagagatcaaggtttat |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22633394 |
ctttccaagtcaactttgacagatttgttcctagagaagaaaccatcccttgagagatcaaggtttat |
22633327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 23354940 - 23354866
Alignment:
| Q |
89 |
aggtacttgatctgcttaagtgttctttgctttccaagtcaactttgacagatttgttcctagagaagaaaccat |
163 |
Q |
| |
|
||||||| ||||| | |||||| |||||||||||||||||||| |||||||||| || ||||| |||||||||| |
|
|
| T |
23354940 |
aggtactcgatcttttaaagtgtgctttgctttccaagtcaactctgacagatttctttctagaaaagaaaccat |
23354866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 23366321 - 23366406
Alignment:
| Q |
86 |
tataggtacttgatctgcttaagtgttctttgctttccaagtcaactttgacagatttgttcctagagaagaaaccatcccttgag |
171 |
Q |
| |
|
|||||||||||||| || | || ||||||||| | || ||||| |||||||| ||||| || ||| |||||||||||||||||| |
|
|
| T |
23366321 |
tataggtacttgatttgttaaaatgttctttgttgtcgaagtctactttgaccgatttctttttaggaaagaaaccatcccttgag |
23366406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 8576 times since January 2019
Visitors: 7803