View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1565_high_29 (Length: 207)
Name: NF1565_high_29
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 3959860 - 3959692
Alignment:
| Q |
19 |
aaataacctattagaaacatttacaa-catttttcttcaacgaccacatcgataaatatttgaccttatgccagatcagctcgaaaaccactatttgatg |
117 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
3959860 |
aaataacctaatagaaacatttacaaacatttttcttcaaccaccacatcgataaatatttgaccttatgccagatcaactcagaaaccactatttgatg |
3959761 |
T |
|
| Q |
118 |
catactcttatctcgtacgaattaaaacttcatcgcaattcttgggaaatagcaatatatgtattatta |
186 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3959760 |
catactcttatctcatacgaattaaaacttcatcgcaatttttgggaaatagcaatatatgtattatta |
3959692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 39181791 - 39181847
Alignment:
| Q |
30 |
tagaaacatttacaacatttttcttcaacgaccacatcgataaatatttgaccttat |
86 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39181791 |
tagaaacatttacaatatttttcttcagtcaccacatcgataaatatttgaccttat |
39181847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 49876118 - 49876164
Alignment:
| Q |
30 |
tagaaacatttacaacatttttcttcaacgaccacatcgataaatat |
76 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
49876118 |
tagaaacagttacaacatttttcttcaaccaccgcatcgataaatat |
49876164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 14000972 - 14001138
Alignment:
| Q |
19 |
aaataacctattagaaacatttacaacatttttcttcaacgaccacatcgataaatatttgaccttatgccagatcagctcgaaaaccactatttgatgc |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| | |
|
|
| T |
14000972 |
aaataacctaatagaaacatttacaacatttttcttcaaccaccacatcgataaatatttgaccttatgccatatcaactcagaaaccactatttgat-c |
14001070 |
T |
|
| Q |
119 |
atactcttatctcgtacgaattaaaacttcatcgcaattcttgggaaatagcaatatatgtattatta |
186 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
14001071 |
atactcttatctcatacgaattaaaacttcatcgcaatttttggggaatagcaatatatgtattatta |
14001138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 6637365 - 6637419
Alignment:
| Q |
30 |
tagaaacatttacaacatttttcttcaacgaccacatcgataaatatttgacctt |
84 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
6637365 |
tagaaacattgacaacatttttcttcagccaccacatcgataaatatttgacctt |
6637419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 26015192 - 26015136
Alignment:
| Q |
30 |
tagaaacatttacaacatttttcttcaacgaccacatcgataaatatttgaccttat |
86 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
26015192 |
tagaaacatttacgacatttttcttcaatccccgcatcgataaatatttgaccttat |
26015136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 26982464 - 26982397
Alignment:
| Q |
19 |
aaataacctattagaaacatttacaacatttttcttcaacgaccacatcgataaatatttgaccttat |
86 |
Q |
| |
|
|||||||| | |||||| |||||||| ||||||||||| | ||||||| |||||||| |||||||||| |
|
|
| T |
26982464 |
aaataacccaatagaaatatttacaatatttttcttcagctaccacattgataaatacttgaccttat |
26982397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 43065393 - 43065333
Alignment:
| Q |
19 |
aaataacctattagaaacatttacaacatttttcttcaacgaccacatcgataaatatttg |
79 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||| | | |||||||||||||||||||| |
|
|
| T |
43065393 |
aaataacataatagaaacatttacatcatttttctatagccaccacatcgataaatatttg |
43065333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9177 times since January 2019
Visitors: 7893