View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565_high_3 (Length: 450)
Name: NF1565_high_3
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 6 - 433
Target Start/End: Complemental strand, 56175975 - 56175547
Alignment:
| Q |
6 |
agataatacttaagaaacatgtgccatttaaaacaaatatagtaattgaccgctttcaaaatcacataacttaataactgcacctgtaggggcatttttc |
105 |
Q |
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| T |
56175975 |
agataatacttaagaaacatgtgccatttaaaacaaatatagtaattgaccgctttcaaaatcacataacttaataactggacctgtaggggcatttttc |
56175876 |
T |
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| Q |
106 |
ttttcaaatgacaggtgaaatcgttgatgagaaactcttcaggcggaagtccaaagagtttttgaaaagctgaatttgtttgaggagatcgcaaattaat |
205 |
Q |
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| T |
56175875 |
ttttcaaatgacaggtgaaatcgttgatgagaaactcttcaggcggaagtccaaagagtttttgaaaagctgaatttgtttgaggagatcgcaaattaat |
56175776 |
T |
|
| Q |
206 |
ctacaattttatacatggat-nnnnnnntccaaataaggtcataactcaataatacttaagtgcaacgctgcaaataaaaactaccaaacggttcggtaa |
304 |
Q |
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| T |
56175775 |
ctacaattttgtacatggataaaaaaaatccaaataaggtcataactcaataatacttaagtgcaacgctgcaaataaaaactaccaaacggttcggtaa |
56175676 |
T |
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| Q |
305 |
catagatggatccgtaccttcttccccacttctttctccattttacttatgtagtgttttacaacattcccacctctagtgttgtccaagaaaactttca |
404 |
Q |
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| T |
56175675 |
catagatggatccgtaccttcttccccacttctttctccattttacttatgtagtgttttacaacattcccacctctagtgttgtccaagaaaactttca |
56175576 |
T |
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| Q |
405 |
agtgcaacttagattggcatgtcagagct |
433 |
Q |
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| T |
56175575 |
agtgcaacttagattggcatgtcagagct |
56175547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 58 - 212
Target Start/End: Complemental strand, 9997809 - 9997654
Alignment:
| Q |
58 |
ctttcaaaatcacataacttaataa-ctgcacctgtaggggcatttttcttttcaaatgacaggtgaaatcgttgatgagaaactcttcaggcggaagtc |
156 |
Q |
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||||||| |||||||||| ||||| | |||||| |||||||||||||| ||||||||||||||||| || ||||||||||| || ||||| ||||| |
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| T |
9997809 |
ctttcaacatcacataacagaataaaccacacctgcaggggcatttttctcttcaaatgacaggtgaagtcattgatgagaaattcctcaggtggaagcg |
9997710 |
T |
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| Q |
157 |
caaagagtttttgaaaagctgaatttgtttgaggagatcgcaaattaatctacaat |
212 |
Q |
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|||||||||| || || |||||||| ||||||||||| |||| |||||||| |||| |
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| T |
9997709 |
caaagagtttctggaatgctgaattagtttgaggagaccgcatattaatctgcaat |
9997654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 425
Target Start/End: Complemental strand, 9997569 - 9997463
Alignment:
| Q |
319 |
taccttcttccccacttctttctccattttacttatgtagtgttttacaacattcccacctctagtgttgtccaagaaaactttcaagtgcaacttagat |
418 |
Q |
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|||||||||||| || ||||| ||||||||| ||| |||| |||| | || || ||||||||||| ||||||||||||| | | ||||||||||||||| |
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| T |
9997569 |
taccttcttcccaacctctttttccattttatttaaatagtcttttgctacgtttccacctctagtattgtccaagaaaattcttaagtgcaacttagat |
9997470 |
T |
|
| Q |
419 |
tggcatg |
425 |
Q |
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||||||| |
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|
| T |
9997469 |
tggcatg |
9997463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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