View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565_high_31 (Length: 203)
Name: NF1565_high_31
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 3e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 2341964 - 2342154
Alignment:
| Q |
1 |
aaataaaaattgttaatagttactcgaattaagtaatattttgattaaactaaactatgtattaacatgagaggtggaatagaagcagaatgagagcatc |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2341964 |
aaataaaaattgataatagttactcgaattaagtaatgttttgattaaactaaactatgtattaacatgagaggtggaatagaagcagaatgagagcatc |
2342063 |
T |
|
| Q |
101 |
ttcgacacaaactgcataatttttaatttcattgaagcaaatataatgattaaagacatatacttacatgagccaccatttttcacaggtt |
191 |
Q |
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| T |
2342064 |
ttcgacacaaactgcataatttttaatttcattgaagcaaatataatgattaaagacatatacttacatgagccaccatttttcacaggtt |
2342154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 33203551 - 33203721
Alignment:
| Q |
1 |
aaataaaaattgttaatagttactcgaattaagtaatattttgattaaa-ctaaactatgtattaacatgagaggtggaatagaagcagaatgagagcat |
99 |
Q |
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|||||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33203551 |
aaataaaaat-gataatagttactcgaattaagtaatgttttgattaaaactaaactatgtattaacatgagagatggaatagaagcagaatgagagcat |
33203649 |
T |
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| Q |
100 |
cttcgacacaaactgcataatttttaatttcattgaagcaaatataatgattaaagacatatacttacatga |
171 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33203650 |
cttcgatacaaactgcataatttttaatttcattgaagcaaatataatgattaaagacatatacttacatga |
33203721 |
T |
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