View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565_high_4 (Length: 429)
Name: NF1565_high_4
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Complemental strand, 39116345 - 39115946
Alignment:
| Q |
14 |
ttcttagacacaaacctttcttctttgacacaaacctatctgctatgtgcacttgcgtctggactgggtaaggttaagaacaaaaactcacaaagctttc |
113 |
Q |
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| T |
39116345 |
ttcttagacacaaacctttcttctttgacacaaacctatctgctatgtgcacttgcgtctggactgggtaaggttaagaacaaaaactcacaaagctttc |
39116246 |
T |
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| Q |
114 |
tgctatatttttacatattttttctaataatattgtcttgatgttttgatgcagtcaaccatatgttcctcctcaagcaaaacaaatgttacttttgcca |
213 |
Q |
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| T |
39116245 |
tgctatatttttacatattttttctaataatattgtcttgatgttttgatgcagtcaaccatatgttcctcctcaagcaaaacaaatgttacttttgcca |
39116146 |
T |
|
| Q |
214 |
t-aggatctatctaatggttatcatatttgtgtgtctaagttcatgtgtttcttgtcgataaagtaatgaagtttaaaccataagcatttatggagtttg |
312 |
Q |
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| T |
39116145 |
taaggatctatctaatggttatcatatttgtgtgtctaagttcatgtgtttcttgtcgataaagtaatgaagtttaaaccataagcatttatggagtttg |
39116046 |
T |
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| Q |
313 |
gtatctgatgcatatacgtctttatgtttgaagtactcaagcttcataactacgtacctgatttcctttgtcgaccactcacagcacgttttagatgttc |
412 |
Q |
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| T |
39116045 |
atatctgatgcaaatacgtctttatgtttgaagtattcaagcttcataactacgtacctgatttcctttgtcgaccactcacaacacgttttagatgttc |
39115946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 37033110 - 37033061
Alignment:
| Q |
125 |
tacatattttttctaataatattgtcttgatgttttgatgcagtcaacca |
174 |
Q |
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||||||||||||||||||| | |||||| |||||| |||||||| ||||| |
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| T |
37033110 |
tacatattttttctaataacactgtcttaatgtttggatgcagttaacca |
37033061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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