View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565_high_5 (Length: 424)
Name: NF1565_high_5
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 24400738 - 24401130
Alignment:
| Q |
17 |
atgtttaacgtacatgttcttttccggtatgaatcataccacagatgacaaaacagcttgaatctgaatgaacacatgaa-cataaacctag-aactcaa |
114 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
24400738 |
atgtttgacgtacatgttcttttccggtatgaatcataccacagatgacaaaacagcttgaatctgaatgaacacaggaaacataaacctaggaactca- |
24400836 |
T |
|
| Q |
115 |
gtgtatttggaggagaggaaaggattgcagaaaaatgcaaatgagagagtatgtatatgtgtgtaccatcttgtgttactagcaattattatatatatat |
214 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
24400837 |
gtgtatttggaggagagaaaaggattgcagaaaaatgcaaatgagagagtatgtatatgtttgtaccgtcttgtgttactagcaattattatatatatat |
24400936 |
T |
|
| Q |
215 |
tggtaagtgagtgttttgttgaaaaacaaaggaagggtagtgtgagtggttgttggttccttatggcatgtgtgtaaaataaacgtgatcaacaaccagc |
314 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24400937 |
tggtaagtgagtgatttgttgaaaaacaaaggaagggtagtgtaagtggttgttggttccttatggcatgtgtgtaaaataaacgtgatcaacaaccagc |
24401036 |
T |
|
| Q |
315 |
aactaagggcactttagcaaataagcataagttggtaaatatcctgataacaataaaaatgagtttgtttgtattctcagtctcaccggtctctg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24401037 |
aactaagggcactttagcaaataagcataagttggtaaatat-ctgataacaataaaaatgagtttgtttgtattctcagtctcaccggtctctg |
24401130 |
T |
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