View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1565_high_7 (Length: 387)
Name: NF1565_high_7
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 33777525 - 33777163
Alignment:
| Q |
1 |
ccccaattgtttgggaggaacatcaacaccaaataaactattgaaagtgaaccaaacacttccatgagtgtatcaattcttgttgtggtaaacttaatct |
100 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33777525 |
ccccaattgtttggaaggaacattaacaccaaagaaactattgaaagtgaaccaaacacttctatgagtgtatcaattcttgttgtggtaaacttaatct |
33777426 |
T |
|
| Q |
101 |
taatccaaaagaccaaacaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33777425 |
taatccaaaagaccaaacaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaat |
33777326 |
T |
|
| Q |
201 |
ttgaaggaaaccaatgagtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaacaacactcaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33777325 |
ttgaaggaaaccaatgagtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaacaacactcaca |
33777226 |
T |
|
| Q |
301 |
atattgattgtcacttcatgaccttgattaaaactggatcttggtctcataacactagccatg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33777225 |
atattgattgtcacttcatgaccttgattaaaactggatcttggtctcataacactagccatg |
33777163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 301
Target Start/End: Complemental strand, 33774888 - 33774587
Alignment:
| Q |
3 |
ccaattgtttgggaggaacatc----aacaccaaataaactattgaaagtgaaccaaacacttccatgagtgtatcaattcttgttgtggtaaacttaat |
98 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33774888 |
ccaattgtttgggaggaacatcgatcaacaccaaagaaactattgaaagtgagccaaacacttccatgagtgtatcaattcttgtcgtggtaaacttaat |
33774789 |
T |
|
| Q |
99 |
cttaatccaaaagaccaaacaatatagtagaaa-gctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataact |
197 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33774788 |
attaatccagaagaccaagcaatatagtagaaaagctagcaatagtgacaaacattgtctttggatggacatgaaatgcagtgggattatctggataact |
33774689 |
T |
|
| Q |
198 |
aatttgaaggaaaccaatgagtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaacaacactc |
297 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
33774688 |
aatttgaaggaaaccaatgagtcc--agaaaatgaaggccataaggccatgaaaatgattggtttctactcccatgatgttataaacattaactacacta |
33774591 |
T |
|
| Q |
298 |
acaa |
301 |
Q |
| |
|
|||| |
|
|
| T |
33774590 |
acaa |
33774587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 10657513 - 10657853
Alignment:
| Q |
1 |
ccccaattgtttgggaggaacatcaacaccaaataaactattgaaagtgaaccaaacacttccatgagtgtatcaattcttgttgtggtaaacttaatct |
100 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||||| |||| | | |||||||| || |
|
|
| T |
10657513 |
ccccatttgtttgggatgaacatcaacaccaaagaaattattgaaagtgaaccaaacgcttccatgagggtatcaagtcttatagc---aaacttaagct |
10657609 |
T |
|
| Q |
101 |
taatccaaaagaccaaacaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaat |
200 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||| | ||||| | |||||||||||||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
10657610 |
taatccaaaaggcaaagcaatatagtagaaagctagctacagagagtagcattgtctttggatgggcttgaaatgcagtgggattatttggataactaat |
10657709 |
T |
|
| Q |
201 |
ttgaaggaaaccaatgagtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaacaacactcaca |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
10657710 |
ttgaaggaaaccaatgaggacaaagaaaaggaaggtcataaggccatggagaggattggtttctactcccatgatgttataaacattaacaacactggca |
10657809 |
T |
|
| Q |
301 |
atattgattgtcacttcatgaccttgattaaaactggatcttgg |
344 |
Q |
| |
|
| ||| || ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
10657810 |
acatttatggtcacctcatgaccttgattaaaagtggatcttgg |
10657853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 10707449 - 10707755
Alignment:
| Q |
18 |
gaacatcaacaccaaataaactattgaaagtgaaccaaacacttccatgagtgtatcaattcttgttgtggtaaacttaatcttaatccaaaagaccaaa |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||||||| |||| ||| ||||||||||||| | ||| |
|
|
| T |
10707449 |
gaacatcaacaccaaagaaactattgaaagggaaccaaacacttccatgagggtatcaacccttgttgc---aaacataagcttaatccaaaaggcaaaa |
10707545 |
T |
|
| Q |
118 |
caatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatga |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |||||| ||| || |
|
|
| T |
10707546 |
caatatagtagaaagctagcaacagagattatcattgtttttggatggatttgaaatgcagtgggattatctggataagtaatttggaggaaagcaagga |
10707645 |
T |
|
| Q |
218 |
gtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaacaacactcacaatattgattgtcacttc |
317 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | ||| ||||||||||| ||||||||||| ||||||||||||||||| |||| ||| || |||||||| |
|
|
| T |
10707646 |
gtacaaagaaaatgaaggccataaggctatgtagagggttggtttctactcccatgatgttgtaaacattaacaacacttacaacatttatggtcacttc |
10707745 |
T |
|
| Q |
318 |
atgaccttga |
327 |
Q |
| |
|
||||| |||| |
|
|
| T |
10707746 |
atgactttga |
10707755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 90 - 342
Target Start/End: Original strand, 10634024 - 10634273
Alignment:
| Q |
90 |
aaacttaatcttaatccaaaagaccaaacaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatct |
189 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||| | ||| | || ||||| ||| |
|
|
| T |
10634024 |
aaacttaatcttaatccaaaaggccaagcaatatagtaaaaaactagccatagagacaaacattgtctttggatggacttcaaacgaggttggattttct |
10634123 |
T |
|
| Q |
190 |
ggataactaatttgaaggaaaccaatgagtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaa |
289 |
Q |
| |
|
||||| | |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||| ||| || ||| || |||||||| |
|
|
| T |
10634124 |
ggatatcgaatttggaggaaaccaatgagtacaaaaaaaatgaaggccataaggacatgaaaaggattgttttctactcccttggtgtcatgaacattaa |
10634223 |
T |
|
| Q |
290 |
caacactcacaatattgattgtcacttcatgaccttgattaaaactggatctt |
342 |
Q |
| |
|
|||| | | |||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
10634224 |
caactc---ctatattgattgtcacttcagaaccttgattaaaacttgatctt |
10634273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 10693636 - 10693896
Alignment:
| Q |
1 |
ccccaattgtttgggaggaacatcaacaccaaataaactattgaaagtgaaccaaacacttccatgagtgtatcaattcttgttgtggtaaacttaatct |
100 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||| ||||||||||||| ||||||||||||||||||| ||||||| || |||| |||||| | || |
|
|
| T |
10693636 |
ccccaattgtgtgggaagaacatcatcaccaaagaaactattgaaagggaaccaaacacttccatgaaggtatcaaccctagttgc---aaacttgagct |
10693732 |
T |
|
| Q |
101 |
taatccaaaagaccaaacaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaat |
200 |
Q |
| |
|
||||||||||| | || |||||| |||||||||||||| ||||| | ||||||||||||||||| ||||||||| |||| |||||||||||||| || |
|
|
| T |
10693733 |
taatccaaaaggcaaaggaatatattagaaagctagcaacagagagtatcattgtctttggatggatttgaaatgcactgggtttatctggataactgat |
10693832 |
T |
|
| Q |
201 |
ttgaaggaaaccaatgagtacaaagaaaatgaaggccataaggccatgaaaaggattggtttct |
264 |
Q |
| |
|
||| |||||||||| ||||||||||||| ||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
10693833 |
ttggaggaaaccaaggagtacaaagaaagtgaaggccataagacaatgaagaggattggtttct |
10693896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 10698240 - 10698499
Alignment:
| Q |
18 |
gaacatcaacaccaaataaactattgaaagtgaaccaaacacttccatgagtgtatcaattcttgttgtggtaaacttaatcttaatccaaaagaccaaa |
117 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
10698240 |
gaacatcaacaccaaagaaattattgaaagggaaccaaacacttccatgagggtatcaacccttgttgt---aaacttaagcttaatccaaaaggccaaa |
10698336 |
T |
|
| Q |
118 |
caatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatga |
217 |
Q |
| |
|
|||||||| ||||| ||||||||||| || ||| || |||||||||||| ||||||| || ||||| ||||| || |||||||| |||||||||| || |
|
|
| T |
10698337 |
caatataggagaaaactagcaatagacactaacgttatctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaaccaagga |
10698436 |
T |
|
| Q |
218 |
gtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttat |
280 |
Q |
| |
|
||||||||||||| ||||| | ||||||||| |||||| ||||| | ||||||||||||| |
|
|
| T |
10698437 |
gtacaaagaaaataaaggctacaaggccatgttgaggattagtttccattcccatgatgttat |
10698499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 10690290 - 10690564
Alignment:
| Q |
1 |
ccccaattgtttgggaggaacatcaacaccaaataaactattgaaagtgaaccaaacacttccatgagtgtatcaattcttgttgtggtaaacttaatct |
100 |
Q |
| |
|
|||||||| | |||||| |||||||||||||| ||| || ||||||||||||||||||||||| | ||||||| ||||| | |||||||| || |
|
|
| T |
10690290 |
ccccaattttctgggagcaacatcaacaccaatgaaattaatgaaagtgaaccaaacacttccaacaaggtatcaacccttgtagc---aaacttaagct |
10690386 |
T |
|
| Q |
101 |
taatccaaaagaccaaacaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaat |
200 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||||||||||| || ||| |||||||||||||||| ||||| | || ||||| |||||||| |||| |
|
|
| T |
10690387 |
taatcatgaaggccaagcaatatagtagaaagctagcaatagataccaacgttgtctttggatggacttgaaaaggggtaggattttctggatatctaac |
10690486 |
T |
|
| Q |
201 |
ttgaaggaaaccaatgagtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgtt |
278 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||| | ||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
10690487 |
ttggaggaaaccaaggagtacaaagaaaatgaaggctacaaggccatgttgaggattagtttctactcccatgatgtt |
10690564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 10693909 - 10694002
Alignment:
| Q |
250 |
aaaggattggtttctaca---cccatgatgttataaacattaacaacactcacaatattgattgtcacttcatgaccttgattaaaactggatcttg |
343 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| || ||||||||||||| | |||||||| ||||||||| |
|
|
| T |
10693909 |
aaaggattggtttctactactcccatgatgttataaacattaaca---ctcacaacatttatggtcacttcatgacttcgattaaaattggatcttg |
10694002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 15240546 - 15240269
Alignment:
| Q |
1 |
ccccaattgtttgggaggaacatcaacaccaaataaactattgaaagtgaaccaaacacttccatgagtgtatcaattcttgttgtggtaaacttaatct |
100 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||||| ||| ||||||||| |||||||||||||||||||| |||||||| |||||||| ||| |||| | |
|
|
| T |
15240546 |
ccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacacttccatgagggtatcaatccttgttgtatcaaatttaagtt |
15240447 |
T |
|
| Q |
101 |
taatccaaaagaccaaacaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaat |
200 |
Q |
| |
|
||| |||||| | ||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||| || |
|
|
| T |
15240446 |
taacccaaaatgctaaagaatatagtagaaagctagcaatagagactaacattgtctttggatggagttgaaagactgtgggattatctggataacagat |
15240347 |
T |
|
| Q |
201 |
ttgaaggaaaccaatgagtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgtt |
278 |
Q |
| |
|
||| || ||||| || || ||| | ||||||||||||| ||| ||||||| || ||||||| ||| ||||||||||| |
|
|
| T |
15240346 |
ttggagaaaacctataagcacataaaaaatgaaggccacaagaccatgaagagaattggttgctattcccatgatgtt |
15240269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 15246877 - 15246621
Alignment:
| Q |
1 |
ccccaattgtttgggaggaacatcaacaccaaataaactattgaaagtgaaccaaacacttccatgagtgtatcaattcttgttgtggtaaacttaatct |
100 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||| | || ||||||| ||| | || ||| |||| | |
|
|
| T |
15246877 |
ccccaattctttgggaagaacatcaacaccaaagaaattattgaaagcgaaccaaacacttccttaagggtatcaagccttct---ggcaaatttaagtt |
15246781 |
T |
|
| Q |
101 |
taatccaaaagaccaaacaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaat |
200 |
Q |
| |
|
||| || ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| | ||||||||||||||||| ||||| |
|
|
| T |
15246780 |
taaccctaaaagccaaacaatatagtagaaagctagcaatagagactaacattgtctttggattg--ttgaaaggttgtgggattatctggatagctaat |
15246683 |
T |
|
| Q |
201 |
ttgaaggaaaccaatgagtacaaagaaaatgaaggccataaggccatgaaaaggattggtttct |
264 |
Q |
| |
|
| | ||||||| |||||||| | |||| ||||||| | ||||||||| ||||||||||||| |
|
|
| T |
15246682 |
tcg--ggaaacctctgagtacacaaaaaaataaggccacagggccatgaagaggattggtttct |
15246621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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