View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1565_high_8 (Length: 384)
Name: NF1565_high_8
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 38865761 - 38865995
Alignment:
| Q |
17 |
ttaagtacaatcttcatgcaagtggttatatcgcaatatatatgtttggtttaagaagacgtggttcctaattaaagcgggcgggataatgtaaatgaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38865761 |
ttaagtacaatcttcatgcaagtggttatatcgcaatatatatgttttgtttaagaagacgtggttcctaattaaagcgggcgggataatgtaaatgaca |
38865860 |
T |
|
| Q |
117 |
acaattgatcgatcaaattgacaaaatgtttaagctaattaaatttgatctgcaatctaatgtaatgtaatctaagtaatactatttgtctacagctata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38865861 |
acaattgatcgatcaaattgacaaaatgtttaagctaattaaatttgatctgcaatctaatgtaatgtaatctaagtaatactatttgtctacagctata |
38865960 |
T |
|
| Q |
217 |
cgtacttttgtgcggaaaaagtgcttgtgcttgtg |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38865961 |
cgtacttttgtgcggaaaaagtgcttgtgcttgtg |
38865995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 301 - 375
Target Start/End: Original strand, 38866040 - 38866114
Alignment:
| Q |
301 |
agcttcttggcaatttggatgaagtagtagggcacatcgtgaattagtatagtaaccacggaagacaagaattat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38866040 |
agcttcttggcaatttggatgaagtagtagggcacatagtgaattagtatagtaaccacggaagacaagaattat |
38866114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 38841834 - 38841906
Alignment:
| Q |
107 |
gtaaatgacaacaattgatcgatcaaattgacaaaatgtttaagctaattaaatttgatctgcaatctaatgtaatgtaat |
187 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
38841834 |
gtaaatgacaacaattgatc----aaattgacaaaatgtttaagc----taaatttgatctgcaatctaatataatttaat |
38841906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 38862383 - 38862444
Alignment:
| Q |
29 |
ttcatgcaagtggttatatcgcaatatatatgtttggtttaagaagacgtggttcctaattaaagc |
94 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
38862383 |
ttcatgcaagtggttagatcgtaatatat----ttggtttaagaagtcgtggctcctaattaaagc |
38862444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 38850329 - 38850285
Alignment:
| Q |
128 |
atcaaattgacaaaatgtttaagctaattaaatttgatctgcaatc |
173 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
38850329 |
atcaaattggcaaaatgtttaagctaatt-aatttgatatgcaatc |
38850285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13371 times since January 2019
Visitors: 8302