View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565_low_11 (Length: 369)
Name: NF1565_low_11
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 52238932 - 52239283
Alignment:
| Q |
1 |
tggatccaattaagaaatattatgtcatatttttgtaaataaattttgaaagaattaattttacttagaggattagcagtattcatcaaaactaaaatac |
100 |
Q |
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| T |
52238932 |
tggatccaattatgaaatattatgtcatatttttgtaaataaattttgaaagaattaattttacttagaggattagcagtattcatcaaaactaaaatac |
52239031 |
T |
|
| Q |
101 |
atatcaagaattctcctatgtaacaaacggatccatacacaaagaagatacgtagaaaattaatcacgtaattaaacctaaatggcaaatgagtttgata |
200 |
Q |
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| T |
52239032 |
atatcaagaattctcctatgtaacaaacggatccatacacaaagaagatacgtagaaaattaatcatgtaattaaacctaaatggcaaatgagtttgata |
52239131 |
T |
|
| Q |
201 |
aagctttacttaaaaaattgactatatttttgttaaaatcaattagagaattacgtgtagaagcaacaaacacacatgcacaaaactaaatgaaacgaat |
300 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52239132 |
aaactttacttaaaaaattgactatatttctgttaaaatcaattagagaataacgtgtagaagcaacaaacacacatgcacaaaact-aatgaaacgaat |
52239230 |
T |
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| Q |
301 |
agtcttgcacctacagacacggggttaagtaaaagcattaatttcttagatat |
353 |
Q |
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| T |
52239231 |
agtcttgcacctacagacacggggttaagtaaaagcattaatttcttagatat |
52239283 |
T |
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