View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565_low_16 (Length: 303)
Name: NF1565_low_16
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 41883754 - 41884035
Alignment:
| Q |
1 |
cgacataaaattattcttattagtacatgtgtaatattacacatttaaacatagaattattcttattagtaattgcaggtgagttattgtgataagttaa |
100 |
Q |
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| T |
41883754 |
cgacataaaattattcttattagtaca-gtgtaatattacacatttaaacataaaattattcttattagtaattgcaggtgagttattgtgataagttaa |
41883852 |
T |
|
| Q |
101 |
tagtaaaatacaataagttaggggggttggtatacatccatctttagaatgaagttagtgaatagtgagtgcttacgggtaaaagattttttatcttctt |
200 |
Q |
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| T |
41883853 |
tagtaaaatacaataagttaggggggttggtatacatccatctttagaatgaagttagtgaatagtgagtgcttacgggtaaaagattttttatcttctt |
41883952 |
T |
|
| Q |
201 |
catatgtgattgaaatttttagattttacgtcacaggttacctttagacatttgtcattgctagttcctactccttcatttga |
283 |
Q |
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| T |
41883953 |
catatgtgattgaaatttttagattttacgtcacaggttacctttagacatttgtcattgctatttcctactccttcatttga |
41884035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 41883714 - 41883778
Alignment:
| Q |
7 |
aaaattattcttattagtacatgtgtaatattacacatttaaacatagaattattcttattagta |
71 |
Q |
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| T |
41883714 |
aaaattattcttattagtacatgtgtaatattacacatttcgacataaaattattcttattagta |
41883778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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