View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565_low_20 (Length: 259)
Name: NF1565_low_20
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 1180448 - 1180676
Alignment:
| Q |
18 |
aatacagtattcccaacagatactggaaggtcaggagcaataccatgtcttgccaatcagtgtaattgaagccaaatcacttacaaaattggtgttgcag |
117 |
Q |
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| T |
1180448 |
aatacagtattcccaacagatactggaaggtcaggagcaataccatgtcttgccaatcagtgtaattgaagccaaatcacttacaaagttggtgttgcag |
1180547 |
T |
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| Q |
118 |
gggaatatcaagattgatccagtattcatgaattattcgatcaagtttttctctttgagggaattgtcactaacgcgtgtactttttggagatgaacatg |
217 |
Q |
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| T |
1180548 |
gggaatatcaagattgatccagtattcatgaattattcgatcaagtttttctctttgagggaattgtcactaacgcgtgtactttttggagatgaacatg |
1180647 |
T |
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| Q |
218 |
caattagccaactcatctctttttgtcct |
246 |
Q |
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| T |
1180648 |
caattaaccaactcatctctttttgtcct |
1180676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 66 - 244
Target Start/End: Original strand, 1185861 - 1186039
Alignment:
| Q |
66 |
cttgccaatcagtgtaattgaagccaaatcacttacaaaattggtgttgcaggggaatatcaagattgatccagtattcatgaattattcgatcaagttt |
165 |
Q |
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| T |
1185861 |
cttgccaatgtgtgtcattgaagccaaatcacttacaaagttggtgttggaggggtttataaagattgatccaatattcacgaatcattcaataaagttt |
1185960 |
T |
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| Q |
166 |
ttctctttgagggaattgtcactaacgcgtgtactttttggagatgaacatgcaattagccaactcatctctttttgtc |
244 |
Q |
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| T |
1185961 |
ttctcattgagggaattgtcactaaggcatgtacttttggtagatgaacatgcaatcaaccacctcatctctttttgtc |
1186039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 10202788 - 10202870
Alignment:
| Q |
123 |
tatcaagattgatccagtattcatgaattattcgatcaagtttttctctttgagggaattgtcactaacgcgtgtactttttg |
205 |
Q |
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| T |
10202788 |
tatcaagattgatccaataatcatgaattattcaatcaagtttttctcattgagggtattgtcactaaggcgagtactttttg |
10202870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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