View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565_low_22 (Length: 252)
Name: NF1565_low_22
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1565_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 43742919 - 43743131
Alignment:
Q |
18 |
acaacttagtactttgaagagtttacatcaatgataagatatttgatgtagtacggagtttactcacacaaagagaatgatgacgtttctagctcaatac |
117 |
Q |
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T |
43742919 |
acaacttggtactttgaagagtttacatcaatgataagataca------agtacagagtttactcacacagagagaatgatgacgtttctagctcaatac |
43743012 |
T |
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Q |
118 |
aagtgtataatattttgatggaaagtgtatgaaatgaatagcacttgtgtctttctttatttcaagtgtagctttttctcttgcgcttgtaagtttggtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
43743013 |
aagtgtataatattttgatggaaagtgtatgaaatgaatagcacttgtgtctttctttatttcaagtgtagctttttctcttgcgcttgtaagtttggtg |
43743112 |
T |
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Q |
218 |
ctatttcacatcggaaagt |
236 |
Q |
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|||||||| || ||||||| |
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T |
43743113 |
ctatttcatatgggaaagt |
43743131 |
T |
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