View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565_low_27 (Length: 239)
Name: NF1565_low_27
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31742488 - 31742710
Alignment:
| Q |
1 |
agagaatgaccggatgtttaaacttcatttctactctattcaaaatttgaaatttcaaaagtttatttgctcaaaattttggtgggaattttatgnnnnn |
100 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |
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| T |
31742488 |
agagaatgactggatggttaaacttcatttctactctattcaaaatttgaaatttcaaaagtttatttgctcaaaattttggtcgaaattttttggaaaa |
31742587 |
T |
|
| Q |
101 |
nngtggtgggagtttgcctacttttttcaatttgaaatccaaataagttgtgagaatatcaatagccacattaaaccagaataaaaccgatgtattcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31742588 |
aagtggtgggagtttgcctacttttttcaatttgaaatccaaatgagctgtgagaatatcaatagccacattaaaccataataaaaccgatgtattcttg |
31742687 |
T |
|
| Q |
201 |
tgaagagggagaggcgtgtttgt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
31742688 |
tgaagagggagaggcgtgtttgt |
31742710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5165007 - 5165228
Alignment:
| Q |
1 |
agagaatgaccggatgtttaaacttcatttctactctattcaaaatttgaaatttcaaaagtttatttgctcaaaattttggtgggaattttatgnnnnn |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5165007 |
agagaatgacgggatgtttaaacttcatttctactctatttaaaatttgaaatttcaaaagtttatttgctcaaaattttggtgggaattttctggaaaa |
5165106 |
T |
|
| Q |
101 |
nngtggtgggagtttgcctacttttttcaatttgaaatccaaataagttgtgagaatatcaatagccacattaaaccagaataaaaccgatgtattcttg |
200 |
Q |
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| T |
5165107 |
aagtggtgggagtttgcctacttttttcaatttgaaatccaaatgagctgtgagaatatcaatagccacattaaaccagaataaaactgatgtattcttg |
5165206 |
T |
|
| Q |
201 |
tgaagagggagaggcgtgtttgt |
223 |
Q |
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|||||| ||||||| |||||||| |
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| T |
5165207 |
tgaaga-ggagaggtgtgtttgt |
5165228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3804931 - 3804726
Alignment:
| Q |
1 |
agagaatgaccggatgtttaaacttcatttctactctattcaaaatttgaaatttcaaaagtttatttgctcaaaattttggtgggaattttatgnnnnn |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3804931 |
agagaatgactagatgtttaaacttcatttctactctattcaaaatttgaaatttcaaaagtttatttgctcaaaattttggtgggaattttctggaaaa |
3804832 |
T |
|
| Q |
101 |
nngtggtgggagtttgcctacttttttcaatttgaaatccaaataagttgtgagaatatcaatagccacattaaaccagaataaaaccgatgtattcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
3804831 |
aagtggtgggagtttgcctacttttttcaatttgaaatccaaa-------tgagaatatcaatagccac----------aataaaacctatgtattcttg |
3804749 |
T |
|
| Q |
201 |
tgaagagggagaggcgtgtttgt |
223 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
3804748 |
tgaagagggagagacgtgtttgt |
3804726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 8435120 - 8435255
Alignment:
| Q |
1 |
agagaatgaccggatgtttaaacttcatttctactctattcaaaatttgaaatttcaaaagtttatttgctcaaaattttggtgggaattttatgnnnnn |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8435120 |
agagaatgactggatgtttaaacttcatttctactctattcaaaatttgaaatttcaaaaatttatttgctcaaaattttggtgggaattttatgaaaaa |
8435219 |
T |
|
| Q |
101 |
nngtggtgggagtttgcctacttttttcaatttgaa |
136 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
8435220 |
aagtggtgggagtttgcctacttttttcaatttgaa |
8435255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 27149782 - 27149818
Alignment:
| Q |
187 |
ccgatgtattcttgtgaagagggagaggcgtgtttgt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
27149782 |
ccgatgtattcttgtgaagagggagaggcgtgtttgt |
27149818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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