View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565_low_29 (Length: 234)
Name: NF1565_low_29
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3576311 - 3576533
Alignment:
| Q |
1 |
tttgttgtatacgccgattaaaacctacgggcaaccgctgcttgaaatcctctttgccaatcaacaagaagatcctacttgctctctttaaacacaagca |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |
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| T |
3576311 |
tttgttgtatacgccgattaaaacctacaggcaaccgctgcttgaaatcctctttgccaatcaacaagaagatcctactcgttttctttaaacacaagca |
3576410 |
T |
|
| Q |
101 |
cggggtccacaagggtattaacacaaattactatctactgttcaacaaatacaaatatgcataaacaaagcaccaaaacttttataaatcatggtatctg |
200 |
Q |
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| T |
3576411 |
ctgggtccacaagggtattaacacaaattactatctactgttcaacaaatacaaatatgcataaacaaagcaccaaaacttttataaatcacggtaccag |
3576510 |
T |
|
| Q |
201 |
aaattgattagaagcaatatttg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
3576511 |
aaattgattagaagcaatatttg |
3576533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 32 - 223
Target Start/End: Complemental strand, 3576210 - 3576019
Alignment:
| Q |
32 |
caaccgctgcttgaaatcctctttgccaatcaacaagaagatcctacttgctctctttaaacacaagcacggggtccacaagggtattaacacaaattac |
131 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||| | | ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3576210 |
caaccgctgcttgaaatcctctttgtcaatcaacaagaagatcttactcgttttctttaaacacaagcactgggtccacaagggtattaacacaaattac |
3576111 |
T |
|
| Q |
132 |
tatctactgttcaacaaatacaaatatgcataaacaaagcaccaaaacttttataaatcatggtatctgaaattgattagaagcaatatttg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
3576110 |
tatctactgttcaacaaatacaaatatgcataaacaaagcaccaaaacttttataaatcacggtacctgaaattgattagaagcaatatttg |
3576019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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