View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1565_low_3 (Length: 471)
Name: NF1565_low_3
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 10 - 454
Target Start/End: Original strand, 53581252 - 53581696
Alignment:
| Q |
10 |
acatcatcatgctttatgttaggaagaaactcatcatagtcatttgatccagaaaataaagcagcattttttctgcttgtgcacaagaatgaaaatgtaa |
109 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53581252 |
acatcataatgctttatgttaggaagaaactcatcatagtcttttgatccagaaaataaagcggcatttgttctgcttgtgcacaagaatgaaaatgtaa |
53581351 |
T |
|
| Q |
110 |
ctttatgagcatctacagcaatccttctagcaaggctaaggagtggacctgcatgtgttccaaatgggaatgccaaaatggccacatgtagtttttcaac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53581352 |
ctttatgagcatctacagcaatccttctagcaaggttaaggagtggacctgcatgtgttccaaatgggaatgccaaaacggccacatgtagtttttcaac |
53581451 |
T |
|
| Q |
210 |
attaactgattcacctttatctctagacatccagtttttcaaacgtgcaattgaaaacatgtataactaagatcaatctttgatgtttttgtggccaaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53581452 |
attaactgattcacctttatctctagacatccagtttttcaaacgtgcaattgaaaacatgtataactaagatcaatctttgatgtttttgtggccaaca |
53581551 |
T |
|
| Q |
310 |
ctacttatttttgggtggtctttatatgttgcaagaaagaaacaaactagaagaaaagttacacatatgtggttgaaaaataatagtaacaaattattaa |
409 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
53581552 |
ctgcttatttttgggtggtctttatatgttgcaagaaagaaacaaactagaagaaaagttacacatatgtggttggaaaataatagtaacaaattataaa |
53581651 |
T |
|
| Q |
410 |
tgttaatataaggaggtgcaatgagcgtgacggtagttaggtgtt |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53581652 |
tgttaatataaggaggtgcaatgagcgtgatggtagttaggtgtt |
53581696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 53568003 - 53568142
Alignment:
| Q |
60 |
agaaaataaagcagcattttttctgcttgtgcacaagaatgaaaatgtaactttatgagcatctacagcaatccttctagcaaggctaaggagtggacct |
159 |
Q |
| |
|
||||||||||| | ||||| || || ||||||| ||||||||||||||||||||| |||| ||| |||||| || | | ||||||||||||||| | |
|
|
| T |
53568003 |
agaaaataaagtatcatttgttgtggttgtgcagaagaatgaaaatgtaactttaggagcctctgtagcaatttttttcactaggctaaggagtggagca |
53568102 |
T |
|
| Q |
160 |
gcatgtgttccaaatgggaatgccaaaatggccacatgta |
199 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
53568103 |
gcatgtgtgccaaatgggaatgccaaaacagccacatgta |
53568142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 10162 times since January 2019
Visitors: 7975