View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1565_low_7 (Length: 411)
Name: NF1565_low_7
Description: NF1565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1565_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 396
Target Start/End: Complemental strand, 37715401 - 37715017
Alignment:
| Q |
15 |
caaaggttgatttttaattagtcgtatct--agaaatttannnnnnnaattttctgttggaataaatgaagaaaaaagtcggacttttctttgaaaaa-a |
111 |
Q |
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| T |
37715401 |
caaaggttgatttttaattagtcgtatctctagaaatttatttttttaattttctgttggaataaatgaagaaaaaagtcggacttttctttgaaaaaga |
37715302 |
T |
|
| Q |
112 |
ttgaattgaatgacttcagtaacaatcactactaaaaagtaaaaacagttgaaatattgacaaaaattagagacgaaaaatttaacattggttagtacat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37715301 |
ttgaattgaatgacttcagtaacaatcactactaaaaagtaaaaacagttgaaatatcgacaaaaattagagacgaaaaatttaacattggttagtacat |
37715202 |
T |
|
| Q |
212 |
ttttcgtctctaatacttgccacataattagagatggatattgcattttttcatttctaaattttcatagcgatttaaactttttcaaattgtgatcaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37715201 |
ttttcgtctctaatacttgccacataattagagatggatattgcattttttcatttctaaattttcatagcgatttaaactttttcaaattgtgatcaaa |
37715102 |
T |
|
| Q |
312 |
tggtatatatatatgccctcttatatattttctgtatttcannnnnnnncttggacaggatcaaaacactatccaaagccattaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
37715101 |
tggtatatatatatgccctcttatatattttctgtatttcattttttttcttggacaggatccaaacactatccaaagccattaa |
37715017 |
T |
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