View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1566-INSERTION-1 (Length: 826)
Name: NF1566-INSERTION-1
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566-INSERTION-1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 385 - 641
Target Start/End: Complemental strand, 24800062 - 24799808
Alignment:
| Q |
385 |
ctagaatttcttagaaagcaaagtaggccttattatccattcacaacgcaatctattttttgacaaattgtcgtgtagcaatcttagttaccctaatttt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24800062 |
ctagaatttcttagaaagcaaagtaggccttattatccattcacaacgcaatctattttttgacaaattgtcatgtagcaatcttagttaccctaatttt |
24799963 |
T |
|
| Q |
485 |
atgcaagtgtgaatattccttgctccttttaagtgttaaatgttgacaattgaacctgaaatcactataactacaatataagacttatggattagaaatc |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24799962 |
atgcaagtgtgaatattccttgctccttttaagtgttaaatgttgacaattgaacctgaaatcactataactacaatataagacttatggattagaaatc |
24799863 |
T |
|
| Q |
585 |
aaaattttctttctctaaattgattgatccataactacaatataagacttattgatt |
641 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24799862 |
aaaattttc--tctctaaattgattgatccataactacaatataagacttattgatt |
24799808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 24800440 - 24800129
Alignment:
| Q |
8 |
attccaacatccatgaaagtggttactttatcttcaaaggtttttcttgacc-gtctttcaactagacagagctttatgaatgctctatcatccgaagtg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
24800440 |
attccaacatccatgaaagtggttactttatcttcaaaggtttttcttgacctgtcttccaactagacagagctttatgaatgctctatcgttcgaagtg |
24800341 |
T |
|
| Q |
107 |
tcttcaannnnnnnnnnnnnnnggaggggggcggagattgttcacctatttcttcattgtgaggtccaagcagatgtgtggacaaaggtgatattgtggc |
206 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
24800340 |
tcttcaatgtgtgcggtgtgtgggaggggggcggagactgttcacctatttcttcattgtgagctccaagcggatgtgtggacaaaggtgatgttgtggc |
24800241 |
T |
|
| Q |
207 |
tagcgtatagttttcttatgcctccaaatttatttattcactgggcttgttggaatgaggaggaaagcaagaagaaaattaagaaagaattttggctaat |
306 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24800240 |
tagagtatagttttcttatgcctccaaatttatttattcactgggcttgttggaatgaggaggaaagcaagaagaaaattaagaaaggattttggctaat |
24800141 |
T |
|
| Q |
307 |
ttggcattgttt |
318 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24800140 |
ttggcattgttt |
24800129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 626 - 823
Target Start/End: Complemental strand, 24799789 - 24799592
Alignment:
| Q |
626 |
ataagacttattgattagaaatcaaaattttctttctctaaattgagtgatccatattatctctaagcttaattgtctctataactgcaacatcatattg |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24799789 |
ataagacttattgattagaaatcaaaattttctttctctaaattgagtgatccatattatctctaagcttaattgtctctataactgcaacatcatattg |
24799690 |
T |
|
| Q |
726 |
tatgttagggatctaatctcgttgacaactatacctaccttacctatagcatagcttgttgggtatacctttctaatattcagcacattttacttaac |
823 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24799689 |
tatgttagggatctaatctcgttgacaactatacctaccttacctatagcatagcttgttgggtatacctttctaatattcagcacattttacttaac |
24799592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 562 - 617
Target Start/End: Complemental strand, 24799789 - 24799734
Alignment:
| Q |
562 |
ataagacttatggattagaaatcaaaattttctttctctaaattgattgatccata |
617 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24799789 |
ataagacttattgattagaaatcaaaattttctttctctaaattgagtgatccata |
24799734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 615 - 681
Target Start/End: Complemental strand, 24799896 - 24799832
Alignment:
| Q |
615 |
ataactacaatataagacttattgattagaaatcaaaattttctttctctaaattgagtgatccata |
681 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
24799896 |
ataactacaatataagacttatggattagaaatcaaaattttc--tctctaaattgattgatccata |
24799832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 37269282 - 37269236
Alignment:
| Q |
214 |
tagttttcttatgcctccaaatttatttattcactgggcttgttgga |
260 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
37269282 |
tagttttgttatgcccccaaatctatttattcactgggcttgttgga |
37269236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 16497 times since January 2019
Visitors: 3768