View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1566-INSERTION-2 (Length: 828)
Name: NF1566-INSERTION-2
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566-INSERTION-2 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 791; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 791; E-Value: 0
Query Start/End: Original strand, 6 - 828
Target Start/End: Original strand, 8457480 - 8458302
Alignment:
| Q |
6 |
caatatcgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457480 |
caatatcgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattat |
8457579 |
T |
|
| Q |
106 |
gcaaaagggtaagatgtgctacactacacctttagaatattgagggttttcctttggcttcttgctttatatattcaggagttatatatagttttatacc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457580 |
gcaaaagggtaagatgtgctacactacacctttagaatattgagggttttcctttggcttcttgctttatatattcaggagttatatatagttttatacc |
8457679 |
T |
|
| Q |
206 |
tcaattctgtcattggtagatattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaa |
305 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8457680 |
tcaattctgtcatttgtagatattcaccaaaatatgtgaaagaatatattgaaggaccaaagccaatgttatctgttggggagtattgggatacatgcaa |
8457779 |
T |
|
| Q |
306 |
ctacaacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaataca |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457780 |
ctacaacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaataca |
8457879 |
T |
|
| Q |
406 |
ttggcctttcaatatttctttttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatggc |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8457880 |
ttggcctttcaatatttctttttcattttacactcagctctcttattttttactctttgcagataaccatagacaacgaataatcaattggattgatggc |
8457979 |
T |
|
| Q |
506 |
actggacagctttcaactgcatttgacttcacaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaa |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457980 |
actggacagctttcaactgcatttgacttcacaacgaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaa |
8458079 |
T |
|
| Q |
606 |
gcattgcagttagatcttacccttttttgctagtcaataagttaatttctttgtacaaactttgatgcgcatgcagtctcatgtatatcaggtattgaat |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
8458080 |
gcattgcagttagatcttacccttttttgctagtcaataagttaatttctttgtacaaactttgatacgcatgcagtttcatgtatatcaggtattgaat |
8458179 |
T |
|
| Q |
706 |
tcattttttcatgttaccattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtg |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458180 |
tcattttttcatgttaccattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtg |
8458279 |
T |
|
| Q |
806 |
gccttcaagatcagtcacatttg |
828 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8458280 |
gccttcaagatcagtcacatttg |
8458302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 6 - 588
Target Start/End: Complemental strand, 6827850 - 6827278
Alignment:
| Q |
6 |
caatatcgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattat |
105 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6827850 |
caatatcgaccacactcaagattgtgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattat |
6827751 |
T |
|
| Q |
106 |
gcaaaagggtaagatgtgctacactacacctttagaatattgagggttttcc-tttggcttcttgctttatatattcaggagttatatatagttttatac |
204 |
Q |
| |
|
|| ||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||| || |
|
|
| T |
6827750 |
gc-aaagggtaagatgtg-----ctacaccttttgaaaattgattgttttccttttggcttcttactttatatattcaggag----ctatagttttacac |
6827661 |
T |
|
| Q |
205 |
--ctcaattctgtcattggtagatattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatg |
302 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| |||||||||| |||| || |
|
|
| T |
6827660 |
ctctcaattctgtcatttgtagctattcaccaaaatatgttaaagactatattgaaggagcacaaccactgttatctgtcggggagtatttggatgtttg |
6827561 |
T |
|
| Q |
303 |
caactacaacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6827560 |
caactacaacggttctactttggactataaccaaggta---tgcttaaaattctcattcatgaaataaatgaatactttttggttactaagtatgtgaat |
6827464 |
T |
|
| Q |
403 |
acattggcctttcaatatttctttttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgat |
502 |
Q |
| |
|
||||| |||||||||| ||||||| |||| |||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
6827463 |
acattaccctttcaatacttcttttgcattgtacacttagctcacttattttttactttttgcagatagccataggcaacgaataatcaaatggattgat |
6827364 |
T |
|
| Q |
503 |
ggcactggacagctttcaactgcatttgacttcacaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaat |
588 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6827363 |
ggcagtggacatctttcaactggatttgacttcacaaccaagggaattctccaggtacctaacattttgtcctaagtatgttaaat |
6827278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 690 - 818
Target Start/End: Complemental strand, 6827279 - 6827150
Alignment:
| Q |
690 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
788 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6827279 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattctggcgtctgcgtgatgctcaagggaagccacct |
6827180 |
T |
|
| Q |
789 |
ggtgtgattggatggtggccttcaagatca |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6827179 |
ggtgtgattggatggtggccttcaagatca |
6827150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 588
Target Start/End: Original strand, 9822296 - 9822866
Alignment:
| Q |
8 |
atatcgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgc |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9822296 |
atatcgaccacactcaagattttgtgagaaaggatatcataggatggcttcagtggctttgccataatgtgggctttcaggattttcgttttgattatgc |
9822395 |
T |
|
| Q |
108 |
aaaagggtaagatgtgctacactacacctttagaatattgagggttttcc-tttggcttcttgctttatatattcaggagttatatatagttttatac-- |
204 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||| || |
|
|
| T |
9822396 |
-aaagggtaagatgtg-----ctacaccttttgaaaattgattgttttccttttggcttcttactttatatattcaggag----ctatagttttacacct |
9822485 |
T |
|
| Q |
205 |
ctcaattctgtcattggtagatattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgca |
304 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| |||||||||| |||| |||| |
|
|
| T |
9822486 |
ctcaattctgtcatttgtagctattcaccaaaatatgttaaagactatattgaaggagcacaaccactgttatctgtcggggagtatttggatgtttgca |
9822585 |
T |
|
| Q |
305 |
actacaacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatac |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9822586 |
actacaacggttctactttggactataaccaaggta---tgcttaaaattctcattcatgaaataaatgaatactttttggttactaagtatgtgaatac |
9822682 |
T |
|
| Q |
405 |
attggcctttcaatatttctttttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatgg |
504 |
Q |
| |
|
||| |||||||||| ||||||| |||| |||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
9822683 |
attaccctttcaatacttcttttgcattgtacacttagctcacttattttttactttttgcagatagccataggcaacgaataatcaaatggattgatgg |
9822782 |
T |
|
| Q |
505 |
cactggacagctttcaactgcatttgacttcacaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaat |
588 |
Q |
| |
|
|| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9822783 |
cagtggacatctttcaactggatttgacttcacaaccaagggaattctccaggtacctaacattttgtcctaagtatgttaaat |
9822866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 690 - 818
Target Start/End: Original strand, 9822865 - 9822994
Alignment:
| Q |
690 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
788 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9822865 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattatggcgtctgcgtgatgctcaagggaagccacct |
9822964 |
T |
|
| Q |
789 |
ggtgtgattggatggtggccttcaagatca |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9822965 |
ggtgtgattggatggtggccttcaagatca |
9822994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 6 - 445
Target Start/End: Complemental strand, 27964493 - 27964065
Alignment:
| Q |
6 |
caatatcgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattat |
105 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27964493 |
caatatcgaccacactcaagattgtgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattat |
27964394 |
T |
|
| Q |
106 |
gcaaaagggtaagatgtgctacactacacctttagaatattgagggttttccttt-ggcttcttgctttatatattcaggagttatatatagttttatac |
204 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||||||||| |||||||||| |||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
27964393 |
gcaaa-gggtaagatgtgctacac-----cttttgaatattgattgttttccttttggcttcttactttatatattcaggagctataa----ttttatac |
27964304 |
T |
|
| Q |
205 |
ctc--aattctgtcattggtagatattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatg |
302 |
Q |
| |
|
||| |||||||||||| |||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||| || |
|
|
| T |
27964303 |
ctctcaattctgtcatttgtagctattcacctaaatatgttaaagagtatattgaaggagcaaagccactgttatctgtcggggagtatttggatgtttg |
27964204 |
T |
|
| Q |
303 |
caactacaacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27964203 |
caactacaacggttctactttggactataaccaaggta---tgcttaaaattctcattcat-gaataaatgaatactttttggttactaagtatgtgaat |
27964108 |
T |
|
| Q |
403 |
acattggcctttcaatatttctttttcattttacactcagctc |
445 |
Q |
| |
|
||||| |||||||||| ||||||| |||| |||||| ||||| |
|
|
| T |
27964107 |
acattaccctttcaatacttcttttgcattgtacacttagctc |
27964065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 739 - 818
Target Start/End: Complemental strand, 27964043 - 27963964
Alignment:
| Q |
739 |
ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
818 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27964043 |
ctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
27963964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 9e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 695 - 826
Target Start/End: Complemental strand, 25802704 - 25802572
Alignment:
| Q |
695 |
aggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
793 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25802704 |
aggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
25802605 |
T |
|
| Q |
794 |
gattggatggtggccttcaagatcagtcacatt |
826 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
25802604 |
gattggatggtggccttcaagatcagtcacatt |
25802572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 5e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 702 - 819
Target Start/End: Complemental strand, 18361263 - 18361145
Alignment:
| Q |
702 |
gaattcattttttcatgttaccattatttgtaggaagc-tgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgga |
800 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18361263 |
gaattcattttctcatgttaccattatttgtaggaatcatgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgaa |
18361164 |
T |
|
| Q |
801 |
tggtggccttcaagatcag |
819 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18361163 |
tggtggccttcaagatcag |
18361145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 509 - 587
Target Start/End: Complemental strand, 18361345 - 18361265
Alignment:
| Q |
509 |
ggacagctttcaactgcatttgacttcacaacaaagggaat--tctccaggtacccaacattttgtcctaagtatgttaaa |
587 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | |||||||| |||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
18361345 |
ggacaactttcaactgcatatgacttcacagccaagggaatgatctccaggtacccagcattttgtcttaagtatgttaaa |
18361265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 364 - 427
Target Start/End: Complemental strand, 18361425 - 18361362
Alignment:
| Q |
364 |
caaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttt |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||| |
|
|
| T |
18361425 |
caaataaatgaatactttttggttactaagcatgtgaatacattaccctttcaatacttctttt |
18361362 |
T |
|
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