View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566-INSERTION-4 (Length: 291)
Name: NF1566-INSERTION-4
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566-INSERTION-4 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 81 - 291
Target Start/End: Complemental strand, 5281977 - 5281768
Alignment:
| Q |
81 |
tatgatatggaaaatgtatctaattgtatttttggtctcgctactaacgaattttatttttcacttacattaacaaaacttaatttgaatttagtcnnnn |
180 |
Q |
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| T |
5281977 |
tatgatatggaaaatgtatttaattgtatttttggtctcgctaataacgtattttatttttcacttacattaacaaaaattaatttgaatttagtc-taa |
5281879 |
T |
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| Q |
181 |
nnnnnnnnaatttccaagctaaacattaataaggtttaaaagatcaaagcaaaacagaggcattttattattgtcacatctactaatcaactttattata |
280 |
Q |
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| T |
5281878 |
atttttttaattgccgagctaaacatgactaagatgtaaaagatcaaatcaaaacagaggcattttattattgttacgtctactaatcaactttattctt |
5281779 |
T |
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| Q |
281 |
gtagcaattca |
291 |
Q |
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| T |
5281778 |
gtcgcaattca |
5281768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 5254929 - 5254852
Alignment:
| Q |
8 |
aacacttgactccttacaataaaacctgcttggtcaggaatccacatgtcatg--caccttcgtacagcagttcctat |
83 |
Q |
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| T |
5254929 |
aacacttgactccttacaataaaacctgcttggtcggaaatccacaagtcatgcacaccttcgtacaacagttcctat |
5254852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 291
Target Start/End: Complemental strand, 5254780 - 5254689
Alignment:
| Q |
197 |
agctaaacattaataaggtttaaaagatcaaagcaaaacagaggcattttattattgtcacatctactaatca--actttattatagtagcaattca |
291 |
Q |
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| T |
5254780 |
agctaaacattagtaagatttaaaagatcaaa-----acagaggcattttattattgtcacatctactaaatattactttattctagtagcaattca |
5254689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 5180374 - 5180321
Alignment:
| Q |
8 |
aacacttgactccttacaataaaacctgcttggtcaggaatccacatgtcatgc |
61 |
Q |
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| T |
5180374 |
aacacttgactccttacaataaaacctgcttggtcggaaatccacaagtcatgc |
5180321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 5180069 - 5180005
Alignment:
| Q |
216 |
ttaaaagatcaaagcaaaacagaggcattttattattgtcacatctactaatcaactttattatagtagcaattca |
291 |
Q |
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| T |
5180069 |
ttaaaagatcaaatcaaaacagaggcatttt-----------atctactaatcaactttattatagtagcaattca |
5180005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 5282029 - 5282001
Alignment:
| Q |
8 |
aacacttgactccttacaataaaacctgc |
36 |
Q |
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| T |
5282029 |
aacacttgactccttacaataaaacctgc |
5282001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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