View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_high_10 (Length: 399)
Name: NF1566_high_10
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 30174067 - 30174451
Alignment:
| Q |
1 |
ttaaagaaagcaaaacaaatcaaattttgagtaaaaaa-tgttggtttgtaaacttttgtatgagcttgtaaaaatgatcaattggtatttaatttattt |
99 |
Q |
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| T |
30174067 |
ttaaagaaagcaaaacaaatcaaattttgagtaaaaaaatgttggtttgtaaacttttgtatgagcttgtaaaaatgatcaattggtatttaatttattt |
30174166 |
T |
|
| Q |
100 |
tcctttcnnnnnnnaacacaggggagcatacatacttggaagtgacagaaaattcatcaaaagctaaaggtggtgtgataaaagtgattattgaattaaa |
199 |
Q |
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| T |
30174167 |
tcctttctttttttaacacaggggagcatacatacttggaagtgacagaaaattcatcaaaagctaaaggtggtgtgataaaagtgattattgaattaaa |
30174266 |
T |
|
| Q |
200 |
ctttcgaggtgaatttgagatggcccgtggtaatgaagaatacaatcaactagtgaagcgattaccagaaatatttgttggaaaagctgaaagattaaga |
299 |
Q |
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| T |
30174267 |
ctttcgaggtgaatttgagatggcccgtggtaatgaagaatacaatcaactagtgaagcgattaccagaaatatttgttggaaaagctgaaagattaaga |
30174366 |
T |
|
| Q |
300 |
gtattggttaagataatgtgttcagctgctaaaaaatgcatgaaggagaagaaattgcatttaggaccatggaggaaacaaaagt |
384 |
Q |
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| T |
30174367 |
gtattggttaagataatgtgttcagctgctaaaaaatgcatgaaggagaagaaattgcatttaggaccatggaggaaacaaaagt |
30174451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 12360137 - 12360186
Alignment:
| Q |
183 |
gtgattattgaattaaactttcgaggtgaatttgagatggcccgtggtaa |
232 |
Q |
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| T |
12360137 |
gtgattattgaattgaactttagaggtgaatttgagatggcacttggtaa |
12360186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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