View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_high_14 (Length: 374)
Name: NF1566_high_14
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 365
Target Start/End: Complemental strand, 24801190 - 24800835
Alignment:
| Q |
10 |
catcatcatcaaagtattgaagtttcaattgggtttgatttttggtgcatattttcttcttgtaaacaattttgcaaaagaaatctatatctcaattcca |
109 |
Q |
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| T |
24801190 |
catcatcatcaaagtattgaagtttcaattgggtttgatttttggtgtatattttcttcttgtaaacaattttgcaaaagaaatctatatctcaattcca |
24801091 |
T |
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| Q |
110 |
tttaaaattgggggcaagcgtacccatagcaaggacggtcggagaactgcttgaacaaatttgtgtgttcatcttcttctctctatctcttactttgcat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24801090 |
tttaaaattgggggcaagcgtacccatagcaaggacggtcggagaactgcttgaacaaatttgtgtgttcatcttcttctctctatctcttactttacat |
24800991 |
T |
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| Q |
210 |
tgctatgatttgaacaagaaagatttaatctttacttggtgaaatttctctacatttactttgtaagaactaagttacaaggtaacttgcaaaaaggttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24800990 |
tgctatgatttgaacaagaaagatttaatctttacttggtgaaatttctctacaattactttgtaagaactaagttaaaaggtaacttgcaaaaaggttt |
24800891 |
T |
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| Q |
310 |
gcatctaaatggtggaaggatattgtcaatatggaggaggatgtaggtctaaattg |
365 |
Q |
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| T |
24800890 |
gcatctaaatggtggaaggatattgtcaatatggaggaggatgtaggtctaaattg |
24800835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 24808187 - 24808004
Alignment:
| Q |
14 |
atcatcaaagtattgaagtttcaattgggtttgatttttggtgcatattttcttcttgtaaaca---attttgcaaaagaaatctatatctcaattccat |
110 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||||||| |||| |||||||||| |||||||||||||||| |
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| T |
24808187 |
atcatcaaagtattgaagtttcaatcaggtttaatttttggtgtatcttttcttcttgtaaacagttttttttcaaaagaaatttatatctcaattccat |
24808088 |
T |
|
| Q |
111 |
ttaaaattgggggcaagcgtacc----catagcaaggacggtcggagaactgcttgaacaaatttgtgtgttcatcttcttctc |
190 |
Q |
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|| |||||||||||| ||||||| |||||||||||||| |||||||| | | |||||||| ||||||||||||||||||| |
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| T |
24808087 |
ttgaaattgggggcaggcgtacctatatatagcaaggacggttggagaactacctaaacaaattcgtgtgttcatcttcttctc |
24808004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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