View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_high_15 (Length: 351)
Name: NF1566_high_15
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 39109401 - 39109060
Alignment:
| Q |
1 |
aaaagcggtagtttatatttttcggaccattccttcttaacagagtcaggtgttctaacacaagcagcccagtttatagctgaacctccaccgactgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39109401 |
aaaagcggtagtttatatttttcggaccattccttcttaacagagtcaggtgttctaacacaagcagcccagtttatagctgaacctccaccgactgttg |
39109302 |
T |
|
| Q |
101 |
agccagctaagatcatcattttaccgtcaagagttggcatgattccacctgattcatagagttcgttcatcgctgaactttccaaggaagaataatcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39109301 |
agccagctaagatcatcattttaccgtcaagagttggcatgattccacctgattcatagagctcgttcatcgctgaactttccaaggaagaataatcttg |
39109202 |
T |
|
| Q |
201 |
agaaacaaaatactctcctttttctaggatgatcactttatgacctgagtttgcaagaattgcagctgcaactcctccgccgctaccggaaccaacaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39109201 |
agaaacaaaatactctcctttttctaggatgatcactttatgacctgagtttgcaagaattgcagctgcaactcctccgccgctaccggaaccaacaatg |
39109102 |
T |
|
| Q |
301 |
acaacatcgcatttgatcttgtacacgttttgctcttcatct |
342 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39109101 |
acaacatcgcatttgatcttgtacacgttttgctcttcatct |
39109060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 33522479 - 33522542
Alignment:
| Q |
251 |
ttgcaagaattgcagctgcaactcctccgccgctaccggaaccaacaatgacaacatcgcattt |
314 |
Q |
| |
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||||||||| ||||||||||||||||| |||| ||||||||| ||||| || ||||| ||||| |
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| T |
33522479 |
ttgcaagaacagcagctgcaactcctccaccgcaaccggaaccgacaattaccacatcacattt |
33522542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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