View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1566_high_2 (Length: 741)
Name: NF1566_high_2
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_high_2 |
 | |
|
| [»] scaffold0603 (1 HSPs) |
| | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 599; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 8 - 727
Target Start/End: Complemental strand, 11491310 - 11490590
Alignment:
| Q |
8 |
cgagtgagatgaatattgttttcccacagtttctgttaatattggatgacgttctggatgcaagatgtgtcaattggacattacttatagatatcttaaa |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11491310 |
cgagtgacttgaatattgttttcccacagtttctgttaatattggatgacgttctggatgcaagatgtgtcaattggacattacttatagatatcttaaa |
11491211 |
T |
|
| Q |
108 |
tgctggaaaaagaggaagcaagatcatcatcacaacacgggatgaaagactaccaaaatccatgcaaactttttcttatgtccactatttgagacctctg |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11491210 |
tgctggaaaaagaggaagcgagatcatcatcacaacacgagatgaaagactaccaaaatccatgcaaactttttcttatgtccactatttgagacctcta |
11491111 |
T |
|
| Q |
208 |
gaaagcgaagattgttggtctttagtggccagacatgcattt-gggcatgtaacgagcaacaacgatccaatctagaagaaataggcaagaaaattgcnn |
306 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11491110 |
gaaagcgaagattgttggtctttagttgccagacatgcatttggggcatgtaacgagcaacaacgatccaatctagaagaagtaggcaagaaaattgcaa |
11491011 |
T |
|
| Q |
307 |
nnnnntgtgatggattaccattagctgcaataggacttgcggaatttcttcacattgaattgtccccggattactggaataatgtgctaatacgtgacat |
406 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11491010 |
aaaaatgtgatggattaccattagctgttatagaacttgcggaatttcttcacattgaattgtccccggattactggaataatgtgctaatacgtgacat |
11490911 |
T |
|
| Q |
407 |
ttgggaatttgtacattataaggtgcaacctgctctacaattgagctagcattatctatcggctcctttaaaacagtgctttgaatattgttcaattttt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11490910 |
ttgggaatttgtacattataaggtgcaacctgctctacaattgagctaccattatctatcggctcctttaaaacagtgctttgaatattgttcaattttt |
11490811 |
T |
|
| Q |
507 |
ccgaagaattccatcttagnnnnnnnttaggtagtttagttgtggattacaggagggttggtagaatcatccgcggaccaggaaaaagtcggagaagaat |
606 |
Q |
| |
|
|||||||| |||||||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11490810 |
ccgaagaagtccatcttagaaaaaaatgtggtagttcagttgtggattacaagagggttggtagaatcatccgcggaccaggaaaaagtcggagaagaat |
11490711 |
T |
|
| Q |
607 |
actttgatgaactagtgtcaagatcgttaataaatcgaagatctattggtgatgaggaagaaatctttgaaatgtatagcctcaccaatgaattagctac |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11490710 |
actttgatgaactagtgtcaagatcgttaataaatcgacaatctattggtgatgaggaagaaatctttgaaatgtatagcctcaccaatgaattagctac |
11490611 |
T |
|
| Q |
707 |
aatgatttcatcttcatattg |
727 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11490610 |
aatgatttcatcttcatattg |
11490590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 47 - 727
Target Start/End: Original strand, 5051876 - 5052557
Alignment:
| Q |
47 |
tattggatgacgttctggatgcaagatgtgtcaattggacattacttatagatatcttaaatgctggaaaaagaggaagcaagatcatcatcacaacacg |
146 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||| || ||||| ||||| ||| |||| || |||| || |||||||||||||| |
|
|
| T |
5051876 |
tattggatgacgttttggatgcaagatctgtcaattggacattactgatggatatgttaaacgctcagaaaacgggtagcacaattatcatcacaacacg |
5051975 |
T |
|
| Q |
147 |
ggatgaaagactaccaaaatccatgcaaactttttcttatgtccactatttgagacctctggaaagcgaagattgttggtctttagtggccagacatgca |
246 |
Q |
| |
|
||||||||| | |||||||||||| ||| |||| |||||||||||||||||||||| |||||||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
5051976 |
agatgaaagagttccaaaatccatggaaagctttttttatgtccactatttgagacctttggaaagcgaagattgctggtctatagttgccagacatgca |
5052075 |
T |
|
| Q |
247 |
tttgg-gcatgtaacgagcaacaacgatccaatctagaagaaataggcaagaaaattgcnnnnnnntgtgatggattaccattagctgcaataggacttg |
345 |
Q |
| |
|
||||| || ||||| | ||| ||| ||| ||||| |||||||| || | ||||||||| |||||||||||||||||||||||| || | ||| |
|
|
| T |
5052076 |
tttggaccacgtaactaccaaaaactatcaaatcttgaagaaattggaaggaaaattgcagaaaagtgtgatggattaccattagctgcagtaacagttg |
5052175 |
T |
|
| Q |
346 |
cggaatttcttcacattgaattgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgtacattataaggtgcaacctgctctaca |
445 |
Q |
| |
|
|| ||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||||| ||||| |
|
|
| T |
5052176 |
cgagttttcttcgtgaagaattttcccaggattactggaataatgtgctaatacgtgacatttgggaattggtacaatatgtcgtccaacctgcgctaca |
5052275 |
T |
|
| Q |
446 |
attgagctagcattatctatcggctcctttaaaacagtgctttgaatattgttcaatttttccgaagaattccatcttagnnnnnnnttaggtagtttag |
545 |
Q |
| |
|
|| |||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | ||| ||| || |
|
|
| T |
5052276 |
atcgagctacaattctctttcagctcctttaaaacagtgctttgaatattgttcaatttttccgaagaaatacatcttagaaaaaaatgtggtggttcag |
5052375 |
T |
|
| Q |
546 |
ttgtggattacaggagggttggtagaatcatccgcggaccaggaaaaagtcggagaagaatactttgatgaactagtgtcaagatcgttaataaatcgaa |
645 |
Q |
| |
|
||||||||| ||| ||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
5052376 |
ttgtggattgcagaagggttggtagaatcctccgcagatcaggaaaaagtcggagaagagtactttgatgaactagtgtcaagatcgttgatacatcgac |
5052475 |
T |
|
| Q |
646 |
gatctattggtgatgaggaagaaatctttgaaatgtatagcctcaccaatgaattagctacaatgatttcatcttcatattg |
727 |
Q |
| |
|
||||||||| ||||||||| || |||||||||| |||||||| | |||| || || |||||| |||||||||||||||| |
|
|
| T |
5052476 |
aatctattggcaatgaggaagcaaactttgaaatgcatagcctcctccatgattttgccacaatggtttcatcttcatattg |
5052557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 96 - 724
Target Start/End: Complemental strand, 11497689 - 11497066
Alignment:
| Q |
96 |
agatatcttaaatgctggaaaaagaggaagcaagatcatcatcacaacacgggatgaaagactaccaaaatccatgcaaactttttcttatgtccactat |
195 |
Q |
| |
|
|||||||||| ||||||| |||| ||||| | |||||||||||||||||| ||||||||| | ||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
11497689 |
agatatcttacatgctgggaaaaagggaagtaggatcatcatcacaacacgagatgaaagagttccaaaatccatgcaaacctttttttatgtccactat |
11497590 |
T |
|
| Q |
196 |
ttgagacctctggaaagcgaagattgttggtctttagtggccagacatgcatttgg-gcatgtaacgagcaacaacgatccaatctagaagaaataggca |
294 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||| |||| |
|
|
| T |
11497589 |
ttgaaacctctggaaagcgaagattgttggtctttagttgccaggcatgcatttggagcatgtaatgacaaacaacgatccaatctagaagaaattggca |
11497490 |
T |
|
| Q |
295 |
agaaaattgcnnnnnnntgtgatggattaccattagctgcaataggacttgcggaatttcttcacattgaattgtccccggattactggaataatgtgct |
394 |
Q |
| |
|
| ||||||| ||| | || |||||||||||||| || | |||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11497489 |
gggaaattgcaaaaaaatgttacggtataccattagctgcagtatcaattgcggcttttcttcgcattgaattgtccccatattactggaataatgtgct |
11497390 |
T |
|
| Q |
395 |
aatacgtgacatttgggaatttgtacattataaggtgcaacctgctctacaattgagctagcattatctatcggctcctttaaaacagtgctttgaatat |
494 |
Q |
| |
|
||| |||||||||||||||| || |||| | |||||||||||||||||| ||| ||| || ||||| || |||||||||||| |||||||| |||| |
|
|
| T |
11497389 |
aatgcgtgacatttgggaatcaataggttatgacgtgcaacctgctctacaactgaactaccactatctttctcctcctttaaaacggtgctttgcatat |
11497290 |
T |
|
| Q |
495 |
tgttcaatttttccgaagaattccatcttagnnnnnnnttaggtagtttagttgtggattacaggagggttggtagaatcatccgcggaccaggaaaaag |
594 |
Q |
| |
|
|| ||||||||||||||||| |||||||||| | | ||||| || |||||||| ||| ||| || |||||||| ||| || |||||||||| |
|
|
| T |
11497289 |
tgctcaatttttccgaagaactccatcttagaaaaaaatgtgatagttcagctgtggattgcagaaggcttagtagaatcgtccatagatcaggaaaaag |
11497190 |
T |
|
| Q |
595 |
tcggagaagaatactttgatgaactagtgtcaagatcgttaataaatcgaagatctattggtgatgaggaagaaatctttgaaatgtatagcctcaccaa |
694 |
Q |
| |
|
||||| |||||||||||||| |||||| ||| | ||||| ||| ||||| | ||||||||| ||||||| |||||||||| | | ||| | | | |
|
|
| T |
11497189 |
tcggaaaagaatactttgatatactagtatcatggtcgttgatacatcgacggtctattggt------gaagaaaactttgaaatgcaaaaccttatcca |
11497096 |
T |
|
| Q |
695 |
tgaattagctacaatgatttcatcttcata |
724 |
Q |
| |
|
||| |||||||||||| ||||||||||||| |
|
|
| T |
11497095 |
tgatttagctacaatggtttcatcttcata |
11497066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 47 - 525
Target Start/End: Original strand, 2919504 - 2919983
Alignment:
| Q |
47 |
tattggatgacgttctggatgcaagatgtgtcaattggacattacttatagatatcttaaatgctggaaaaagaggaagcaagatcatcatcacaacacg |
146 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||| |||||| || || ||||| |||| | ||| ||||| | |||||||||||| ||||| |
|
|
| T |
2919504 |
tattggatgacgtgtgggatgcaagatccgtcaattggatattactgatggacatctttaatgtggtggaaactggaagtaggatcatcatcactacacg |
2919603 |
T |
|
| Q |
147 |
ggatgaaagactaccaaaatccatgcaaactttttcttatgtccactatttgagacctctggaaagcgaagattgttggtctttagtggccagacatgca |
246 |
Q |
| |
|
||||||||| | |||| |||||||||||| |||| ||||||||||||| |||||| |||||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
2919604 |
agatgaaagagttccaatatccatgcaaacctttttttatgtccactatatgagacatctggaaacagaagattgctggtctttagttgccagacatgca |
2919703 |
T |
|
| Q |
247 |
tttgg-gcatgtaacgagcaacaacgatccaatctagaagaaataggcaagaaaattgcnnnnnnntgtgatggattaccattagctgcaataggacttg |
345 |
Q |
| |
|
||||| |||| || | ||| |||| || ||||||||||||| || | ||||||| ||||| ||||||||||||||||||||| | ||| |
|
|
| T |
2919704 |
tttggagcattggacaaccaaaaacggtctgatctagaagaaattggtagagaaattgcaaaaaaatgtgacggattaccattagctgcaatatcagttg |
2919803 |
T |
|
| Q |
346 |
cggaatttcttcacattgaattgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgtacattataaggtgcaacctgctctaca |
445 |
Q |
| |
|
|| ||||||| | ||||||||| ||| ||||||| |||||||| | | ||||| ||||||| || ||||| |||| ||| | | |||||| |
|
|
| T |
2919804 |
gggctcttcttcatactgaattgtctgtagataactggaagtatgtgctaggagttaacattggggaattgatagattatgaggtccaagccggtctaca |
2919903 |
T |
|
| Q |
446 |
attgagctagcattatctatcggctcctttaaaacagtgctttgaatattgttcaatttttccgaagaattccatcttag |
525 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||| ||||||| |||||||||||||||||| ||| | |||||||||| |
|
|
| T |
2919904 |
attgagctacttctatctttcgactcctttaaaacgctgctttgcatattgttcaatttttccaaaggagtccatcttag |
2919983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 186 - 680
Target Start/End: Original strand, 5965940 - 5966435
Alignment:
| Q |
186 |
tgtccactatttgagacctctggaaagcgaagattgttggtctttagtggccagacatgcatttgg-gcatgtaacgagcaacaacgatccaatctagaa |
284 |
Q |
| |
|
||||||||| |||| |||| ||||||| |||||||| ||||||||| | ||| | ||||||||||| | | |||||| |||| | ||||||||||||| |
|
|
| T |
5965940 |
tgtccactacttgacacctttggaaagtgaagattgctggtctttacttgccgggcatgcatttggagaacataacgaccaacgccaatccaatctagaa |
5966039 |
T |
|
| Q |
285 |
gaaataggcaagaaaattgcnnnnnnntgtgatggattaccattagctgcaataggacttgcggaatttcttcacattgaattgtccccggattactgga |
384 |
Q |
| |
|
||||| |||| || |||| ||| |||||| |||||| |||||| ||| ||||| ||| |||||| || |||||||||| |||||||||| |
|
|
| T |
5966040 |
gaaattggcagagaagttgcaaataaatgttatggatcaccatttgctgcagtagcacttggggatattcttcgcaccaaattgtccccagattactgga |
5966139 |
T |
|
| Q |
385 |
ataatgtgctaatacgtgacatttgggaatttgtacattataaggtgcaacctgctctacaattgagctagcattatctatcggctcctttaaaacagtg |
484 |
Q |
| |
|
|| |||||||| | |||||||| || ||| || || || | || | |||| | ||||| ||| ||| || ||||| ||| ||| ||||||| | || |
|
|
| T |
5966140 |
attatgtgctacaaagtgacattcggttattgatagatcatgatgttcgaccttttatacaactgaactatcactatctttcgactcttttaaaaaactg |
5966239 |
T |
|
| Q |
485 |
ctttgaatattgttcaatttttccgaagaattccatcttagnnnnnnnttaggtagtttagttgtggattacaggagggttggtagaatcatccgcggac |
584 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| ||| || ||||||| ||||||||||| ||| ||| || |||||||| ||| || |
|
|
| T |
5966240 |
ctttgcatattgttcaatttttccgaagaagtccatcatagaaaaaaatttggtagttcagttgtggattgcagaaggcttagtagaatcgtccataaac |
5966339 |
T |
|
| Q |
585 |
caggaaaaagtcggagaagaatactttgatgaactagtgtcaagatcgttaataaatcgaagatctattggtgatgaggaagaaatctttgaaatg |
680 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||||||||||| || || | ||| | |||||||||| |||||||| ||| |||||||||| |
|
|
| T |
5966340 |
caggaaaaagttggtgaagaatactttgatgtactagtgtcaaggtcattgctgcatcaacaatctattggtaatgaggaacaaaactttgaaatg |
5966435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 474 - 725
Target Start/End: Complemental strand, 7492058 - 7491807
Alignment:
| Q |
474 |
ttaaaacagtgctttgaatattgttcaatttttccgaagaattccatcttagnnnnnnnttaggtagtttagttgtggattacaggagggttggtagaat |
573 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||| ||||| |||||||||| | | ||||| ||||||||||| ||| ||| || ||||||| |
|
|
| T |
7492058 |
ttaaaacggtgttttgaatattgttctatttttccaaagaagtccatcttagaaaaaaatatgttagttcagttgtggattgcagaaggctttgtagaat |
7491959 |
T |
|
| Q |
574 |
catccgcggaccaggaaaaagtcggagaagaatactttgatgaactagtgtcaagatcgttaataaatcgaagatctattggtgatgaggaagaaatctt |
673 |
Q |
| |
|
| | | | || || |||||| | ||||||||||||||||||| ||| |||||||| ||||| ||| ||||| ||||||||||| || |||||| || | | |
|
|
| T |
7491958 |
cgtacacagatcatgaaaaatttggagaagaatactttgatgtacttgtgtcaagttcgttgatacatcgatgatctattggtaataaggaagcaaacgt |
7491859 |
T |
|
| Q |
674 |
tgaaatgtatagcctcaccaatgaattagctacaatgatttcatcttcatat |
725 |
Q |
| |
|
|||| || ||| ||||||| |||| |||||||||| | |||| ||||||||| |
|
|
| T |
7491858 |
tgaagtgcataacctcacccatgatttagctacaacggtttcgtcttcatat |
7491807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 364 - 514
Target Start/End: Complemental strand, 21539463 - 21539314
Alignment:
| Q |
364 |
aattgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgta-cattataaggtgcaacctgctctacaattgagctagcattatc |
462 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||| ||||||||||||||||| ||| |||||| | |||||||||| ||||||||||| ||| ||| ||| |
|
|
| T |
21539463 |
aattgtcccaagattattggaataatgtgttaactcgtgacatttgggaattggtaccattatcacgtgcaacctgttctacaattgaactaccatgatc |
21539364 |
T |
|
| Q |
463 |
tatcggctcctttaaaacagtgctttgaatattgttcaatttttccgaagaa |
514 |
Q |
| |
|
| |||| ||||||||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
21539363 |
t-tcggatcctttaaaaccgtgctttgaat-ttgttcaatttttccaaagaa |
21539314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 127 - 514
Target Start/End: Original strand, 4130005 - 4130393
Alignment:
| Q |
127 |
aagatcatcatcacaacacgggatgaaagactaccaaaatccatgcaaactttttcttatgtccactatttgagacctctggaaagcgaagattgttggt |
226 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| | || | | |||||||| ||| || ||||||| ||| ||| || |||||| ||||||||||||| |
|
|
| T |
4130005 |
aagatcattatcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggt |
4130104 |
T |
|
| Q |
227 |
ctttagtggccagacatgcatttg-ggcatgtaacgagcaacaacgatccaatctagaagaaataggcaagaaaattgcnnnnnnntgtgatggattacc |
325 |
Q |
| |
|
||||| | |||||||||||||||| || ||||| | ||||||||||||||||||||| |||| || | ||||||| |||||||| ||||| |
|
|
| T |
4130105 |
ctttacttgccagacatgcatttgtaacaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttacc |
4130204 |
T |
|
| Q |
326 |
attagctgcaataggacttgcggaatttcttcacattgaattgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgtacattat |
425 |
Q |
| |
|
|||||||||||||| ||||| | ||||||| || ||||||| | ||||| |||||| |||| ||| | || ||||||||||| | || || |
|
|
| T |
4130205 |
attagctgcaatagcacttggaggttttcttcgcaccaaattgtcacaagattattggaatgatgttttaaaaagtagtatttgggaattgacagatgat |
4130304 |
T |
|
| Q |
426 |
aaggtgcaacctgctctacaattgagctagcattatctatcggctcctttaaaacagtgctttgaatattgttcaatttttccgaagaa |
514 |
Q |
| |
|
|||||||||| ||||| | ||||||||| | | |||| | |||||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
4130305 |
gaggtgcaaccagctctgctattgagctatcgtcatcttcctgctcctataaaaggatgctttgcttattgttcaatttttccgaagaa |
4130393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 587 - 703
Target Start/End: Original strand, 2920054 - 2920170
Alignment:
| Q |
587 |
ggaaaaagtcggagaagaatactttgatgaactagtgtcaagatcgttaataaatcgaagatctattggtgatgaggaagaaatctttgaaatgtatagc |
686 |
Q |
| |
|
||||||||| || ||||||||||||||| |||||||||||| ||||||||| | || ||||||||| || ||||||| || ||||||||| ||| | |
|
|
| T |
2920054 |
ggaaaaagttggggaagaatactttgatatactagtgtcaaggtcgttaatacagagacgatctattgatggcgaggaagcaaggtttgaaatgaataac |
2920153 |
T |
|
| Q |
687 |
ctcaccaatgaattagc |
703 |
Q |
| |
|
||||| |||| ||||| |
|
|
| T |
2920154 |
ttcacccatgatttagc |
2920170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 628
Target Start/End: Complemental strand, 911227 - 911186
Alignment:
| Q |
587 |
ggaaaaagtcggagaagaatactttgatgaactagtgtcaag |
628 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
911227 |
ggaaaaagttggagaggaatactttgatgaactagtgtcaag |
911186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 335
Target Start/End: Complemental strand, 7492294 - 7492153
Alignment:
| Q |
195 |
tttgagacctctggaaagcgaagattgttggtctttagtggccagacatgcatttgg-gcatgtaacgagcaacaacgatccaatctagaagaaataggc |
293 |
Q |
| |
|
|||||||||| |||||| |||||| | ||||||||||| | |||||||||||||| ||||||||| | |||||||||| ||| |||||||| || |
|
|
| T |
7492294 |
tttgagacctttggaaattgaagatggatggtctttagtttctagacatgcatttggagcatgtaactacaaacaacgatcatatcaagaagaaaatggt |
7492195 |
T |
|
| Q |
294 |
aagaaaattgcnnnnnnntgtgatggattaccattagctgca |
335 |
Q |
| |
|
| ||||||||| ||||||||||||||| | |||||| |
|
|
| T |
7492194 |
atgaaaattgcaaaaaagtgtgatggattaccaatggctgca |
7492153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 7492428 - 7492321
Alignment:
| Q |
47 |
tattggatgacgttctggatgcaagatgtgtcaattggacattacttatagatatcttaaatgctggaaaaagaggaagcaagatcatcatcacaacacg |
146 |
Q |
| |
|
||||||||||||| |||||||| || |||| |||||| |||||| || |||| || |||||||| |||| | ||| | |||||||||||||||||| |
|
|
| T |
7492428 |
tattggatgacgtgtgggatgcaaaatctgtcgattggatattactgatgaatatatttaatgctgggaaaacggaaagtaggatcatcatcacaacacg |
7492329 |
T |
|
| Q |
147 |
ggatgaaa |
154 |
Q |
| |
|
||||||| |
|
|
| T |
7492328 |
agatgaaa |
7492321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 41 - 727
Target Start/End: Original strand, 17311721 - 17312411
Alignment:
| Q |
41 |
tgttaatattggatgacgttctggatgcaagatgtgtcaattggacattacttatagatatcttaaatgctggaaaaagaggaagcaagatcatcatcac |
140 |
Q |
| |
|
||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||| ||||| |
|
|
| T |
17311721 |
tgttagtattggatgatgttttggatgcaagatctgtcaattggacattacttatggatatcttaaatgctatgaaaacaggaagcatgatcattatcac |
17311820 |
T |
|
| Q |
141 |
aacacgggatgaaagactaccaaaatccatgcaaactttttcttatgtccactatttgagacctctggaaagcgaagattgttggtctttagtggccaga |
240 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
17311821 |
aacacgagatgaaagagttccaaaatccatgcaaacctttttttatgtccactatttgagacctctagaaagcgaagattgttggtctttagttgccaga |
17311920 |
T |
|
| Q |
241 |
catgcattt-gggcatgtaacgagcaacaacgatccaatctagaagaaataggcaagaaaattgcnnnnnnntgtgatggattaccattagctgcaatag |
339 |
Q |
| |
|
||||||||| | |||||||| | || |||||||||||| |||||||| |||| | |||||| || ||| |||||||||||||||||||| ||| |
|
|
| T |
17311921 |
catgcatttagaacatgtaacaaccagcaacgatccaatttagaagaagtaggtaggaaaatggcaataaaatgttatggattaccattagctgcagtag |
17312020 |
T |
|
| Q |
340 |
gacttgcggaatttcttcacattgaattgtcc---ccggattactggaataatgtgctaatacgtgacatttgggaatttgtacattataaggtgcaacc |
436 |
Q |
| |
|
|||||| || |||||| ||| |||||||| |||||||||| ||||||| | ||||||| | | ||||||||||| ||||||||| | | | ||| |
|
|
| T |
17312021 |
cacttgcagattttctttgcatcaaattgtcccagccggattacttgaataatttcctaatacataaaatttgggaattggtacattatgatattctacc |
17312120 |
T |
|
| Q |
437 |
tgctctacaattgagctagcattatctatcggctcctttaaaacagtgctttgaatattgttcaatttttccgaagaattccatcttagnnnnnnnttag |
536 |
Q |
| |
|
|||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| | | |
|
|
| T |
17312121 |
tgctctacaattgagctactgttatcttctggatcctttaaaacggtgctttgaatattgttcaatttttccgaagaaatccatcttagaaaaaaatgcg |
17312220 |
T |
|
| Q |
537 |
gtagtttagttgtggattacaggagggttggtagaatcatccgcggaccaggaaaaagtcggagaagaatactttgatgaactagtgtcaagatcgttaa |
636 |
Q |
| |
|
|||||| | ||||||||| ||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17312221 |
gtagttcaattgtggattgcagaagggttggtagaatcgtccgcagatcaggaaaaagtcggagaagaatactttgatgaactagtgtcaagatcgttga |
17312320 |
T |
|
| Q |
637 |
taaatcgaagatctattggtgatgaggaagaaatctttgaaatgtatagcctcaccaatgaattagctacaatgatttcatcttcatattg |
727 |
Q |
| |
|
|| ||||| |||||||||| ||||||||| || |||||||||| |||||||| | |||| || ||||||||| |||||||||||||||| |
|
|
| T |
17312321 |
tacatcgacgatctattggcaatgaggaagcaaactttgaaatgcatagcctcctccatgatttggctacaatggtttcatcttcatattg |
17312411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 628
Target Start/End: Original strand, 13933902 - 13933943
Alignment:
| Q |
587 |
ggaaaaagtcggagaagaatactttgatgaactagtgtcaag |
628 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
13933902 |
ggaaaaagtagccgaagaatactttgatgaactagtgtcaag |
13933943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 4e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 165 - 727
Target Start/End: Original strand, 18388124 - 18388687
Alignment:
| Q |
165 |
atccatgcaaactttttcttatgtccactatttgagacctctggaaagcgaagattgttggtctttagtggccagacatgcatttgg-gcatgtaacgag |
263 |
Q |
| |
|
|||||||||||| ||| || ||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||| | || || ||| | |
|
|
| T |
18388124 |
atccatgcaaacctttcattcggtccactatttgagacctctggagagtgaagattgctggtctttagttgccagacatgcatttagagcttggaacaac |
18388223 |
T |
|
| Q |
264 |
caacaacgatccaatctagaagaaataggcaagaaaattgcnnnnnnntgtgatggattaccattagctgcaataggacttgcggaatttcttcacattg |
363 |
Q |
| |
|
|| |||| || ||||||||||||| || | ||||||| ||| | ||| ||||||||||||||||| ||||| ||| ||||||||| | | |
|
|
| T |
18388224 |
cagcaacagtctgatctagaagaaattggtagagaaattgcaaaaaaatgttacggaataccattagctgcaatatcacttggggattttcttcacttag |
18388323 |
T |
|
| Q |
364 |
aattgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgtacattataaggtgcaacctgctctacaattgagctagcattatct |
463 |
Q |
| |
|
| |||||||| |||||||||| ||| |||| | |||||||||||||||| ||| ||||| | ||||| | |||||||||||||| ||| |||||| |
|
|
| T |
18388324 |
atttgtccccaagttactggaattatgcgctagaaagtgacatttgggaattggtagattatgatgtgcaccgtgctctacaattgatctacagttatct |
18388423 |
T |
|
| Q |
464 |
atcggctcctttaaaacagtgctttgaatattgttcaatttttccgaagaattccatcttagnnnnnnnttaggtagtttagttgtggattacaggaggg |
563 |
Q |
| |
|
|||| |||||||||||| |||||||| || |||||||||||| || ||||| ||||||||| | ||||||| ||||||||||| ||| ||| |
|
|
| T |
18388424 |
atcgactcctttaaaacggtgctttgcattttgttcaattttcccaaagaagtccatcttaaaaaaaattgtggtagttcagttgtggattgcagaaggc |
18388523 |
T |
|
| Q |
564 |
ttggtagaatcatccgcggaccaggaaaaagtcggagaagaatactttgatgaactagtgtcaagatcgttaataaatcgaagatctattggtgatgagg |
663 |
Q |
| |
|
|| ||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||| || || ||| ||| | ||| |||||||||| || |
|
|
| T |
18388524 |
ttattagaatcgttcgcagaccaggaaaaagtcgcagaagaatactttgatgaactagtgtcaaggtctttgatacatcaacaatcaattggtgatgggg |
18388623 |
T |
|
| Q |
664 |
aagaaatctttgaaatgtatagcctcaccaatgaattagctacaatgatttcatcttcatattg |
727 |
Q |
| |
|
||| || |||||||||| || |||| |||| |||||||||| | |||||||||||||||| |
|
|
| T |
18388624 |
aagcaaactttgaaatgcatgacctcgttcatgatttagctacaaaggtttcatcttcatattg |
18388687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 167 - 680
Target Start/End: Complemental strand, 4834 - 4320
Alignment:
| Q |
167 |
ccatgcaaactttttcttatgtccactatttgagacctctggaaagcgaagattgttggtctttagtggccagacatgcatttgg-gcatgtaacgagca |
265 |
Q |
| |
|
|||||||||| ||| || ||||||||| |||| |||||||||||| |||||||| ||||||||| | || ||| ||||||||| ||||||||||| || |
|
|
| T |
4834 |
ccatgcaaacctttctttctgtccactacttgacacctctggaaagtgaagattgctggtctttacttgctggacttgcatttggagcatgtaacgacca |
4735 |
T |
|
| Q |
266 |
acaacgatccaatctagaagaaataggcaagaaaattgcnnnnnnntgtgatggattaccattagctgcaataggacttgcggaatttcttcacattgaa |
365 |
Q |
| |
|
||| | |||||||||||||||||| ||||| ||||||| ||| |||||| |||||| |||||| ||| ||||| ||| ||||| || | || |
|
|
| T |
4734 |
acatcaatccaatctagaagaaattggcaaagaaattgctaataaatgttatggatcaccatttgctgcagtagcacttggggatattctttgcactaaa |
4635 |
T |
|
| Q |
366 |
ttgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgtacattataaggtgcaacctgctctacaattgagctagcattatctat |
465 |
Q |
| |
|
||||||| |||||||||||| |||||||| | ||||||| | ||| || || || | |||| ||| | ||||| ||||||| || ||||| |
|
|
| T |
4634 |
ttgtccctagattactggaattatgtgctagaaaatgacattatgttattattagatcatgatgtgcgaccatttatacaactgagctaccaatatcttc |
4535 |
T |
|
| Q |
466 |
cggctcctttaaaacagtgctttgaatattgttcaatttttccgaagaattccatcttagnnnnnnnttaggtagtttagttgtggattacaggagggtt |
565 |
Q |
| |
|
| |||||||||||| |||||||| ||||||||||||||||| ||||| |||||| ||| || | |||| ||||||||||| ||| ||| || |
|
|
| T |
4534 |
caactcctttaaaacgatgctttgagtattgttcaatttttccaaagaagtccatcatagaaaaaaatttgacagttcagttgtggattgcagaaggctt |
4435 |
T |
|
| Q |
566 |
ggtagaatcatccgcggaccaggaaaaagtcggagaagaatactttgatgaactagtgtcaagatcgttaataaatcgaagatctattggtgatgaggaa |
665 |
Q |
| |
|
||| |||| ||| | ||||||||||||| |||||||||||||||| || | |||||||||| || || ||| ||||| ||||||||||||||| |||| |
|
|
| T |
4434 |
agtaaaatcgtccacaaaccaggaaaaagttggagaagaatactttgctgtattagtgtcaaggtcattgatacatcgacgatctattggtgatggggaa |
4335 |
T |
|
| Q |
666 |
gaaatctttgaaatg |
680 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
4334 |
gcaaactttgaaatg |
4320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 101 - 338
Target Start/End: Original strand, 5988556 - 5988794
Alignment:
| Q |
101 |
tcttaaatgctggaaaaagaggaagcaagatcatcatcacaacacgggatgaaagactaccaaaatccatgcaaactttttct-tatgtccactatttga |
199 |
Q |
| |
|
|||| |||||||| |||| ||||| | |||||||||||||||| ||||||||||| | ||| ||||||||||| | ||||| | |||||||||||||| |
|
|
| T |
5988556 |
tctttaatgctggtaaaatgggaagtaggatcatcatcacaacaagggatgaaagagttgcaagatccatgcaaa-tctttctctctgtccactatttga |
5988654 |
T |
|
| Q |
200 |
gacctctggaaagcgaagattgttggtctttagtggccagacatgcatttgg-gcatgtaacgagcaacaacgatccaatctagaagaaataggcaagaa |
298 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || |||||||||||||| |||| | ||| | ||| |||||||||||||||||| |||| ||| |
|
|
| T |
5988655 |
gacctctggaaagtgaagattgttggtctttagttgctagacatgcatttggcacatgcagcgacataaaacaatccaatctagaagaaattggcaggaa |
5988754 |
T |
|
| Q |
299 |
aattgcnnnnnnntgtgatggattaccattagctgcaata |
338 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| |
|
|
| T |
5988755 |
aattgcaaaaaaatgtgatggattaccatcagctgcaata |
5988794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 587 - 719
Target Start/End: Original strand, 5989052 - 5989184
Alignment:
| Q |
587 |
ggaaaaagtcggagaagaatactttgatgaactagtgtcaagatcgttaataaatcgaagatctattggtgatgaggaagaaatctttgaaatgtatagc |
686 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||| || || ||| | || ||||||||| |||||| |||||||||||||||||| ||| | |
|
|
| T |
5989052 |
ggaaaaagttggagaagaatactttgatatactagtgtcaaggtcattgatacaacggcgatctattgatgatgaagaagaaatctttgaaatgaataac |
5989151 |
T |
|
| Q |
687 |
ctcaccaatgaattagctacaatgatttcatct |
719 |
Q |
| |
|
|||| | |||| |||||||||||| || ||||| |
|
|
| T |
5989152 |
ctcatccatgatttagctacaatggttgcatct |
5989184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 525
Target Start/End: Original strand, 5988896 - 5988981
Alignment:
| Q |
440 |
tctacaattgagctagcattatctatcggctcctttaaaacagtgctttgaatattgttcaatttttccgaagaattccatcttag |
525 |
Q |
| |
|
||||||||||||||| | |||| ||| ||||||||||| ||||||| |||||||||||||||||| ||| | ||| |||||| |
|
|
| T |
5988896 |
tctacaattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttag |
5988981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 183 - 525
Target Start/End: Original strand, 16446924 - 16447267
Alignment:
| Q |
183 |
ttatgtccactatttgagacctctggaaagcgaagattgttggtctttagtggccagacatgcatttgg-gcatgtaacgagcaacaacgatccaatcta |
281 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||||| ||||||||| | ||||||||||||||||| |||||||| | ||| || || |||||||| |
|
|
| T |
16446924 |
ttatgttcactatttgagacctctcgaaagtgaagattgctggtctttaattgccagacatgcatttggaccatgtaactaccaagaaagaaccaatcta |
16447023 |
T |
|
| Q |
282 |
gaagaaataggcaagaaaattgcnnnnnnntgtgatggattaccattagctgcaataggacttgcggaat-ttcttcacattgaattgtccccggattac |
380 |
Q |
| |
|
|||||||| |||| | ||||||| |||| |||||| |||| |||| ||| ||||| ||| | |||||| || || | ||||| |||||| |
|
|
| T |
16447024 |
gaagaaattggcagggaaattgcaaaaaaatgtggtggattgccatatattgcactagcacttg-ggactcttcttcgcagcaaaatttccccagattac |
16447122 |
T |
|
| Q |
381 |
tggaataatgtgctaatacgtgacatttgggaatttgtacattataaggtgcaacctgctctacaattgagctagcattatctatcggctcctttaaaac |
480 |
Q |
| |
|
|||||| |||||||| | | ||||||||||||| | ||| | |||||||| ||| ||| |||||||| |||||||| | | |||| ||||| |
|
|
| T |
16447123 |
tggaattatgtgctagaaactaacatttgggaattgacagattctgaggtgcaagaggctttacgattgagcttacattatctgttgcttcctctaaaag |
16447222 |
T |
|
| Q |
481 |
agtgctttgaatattgttcaatttttccgaagaattccatcttag |
525 |
Q |
| |
|
| ||||||| ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
16447223 |
aatgctttgcatattgttcaaattttccaaagaattccatcttag |
16447267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 679
Target Start/End: Original strand, 16447338 - 16447430
Alignment:
| Q |
587 |
ggaaaaagtcggagaagaatactttgatgaactagtgtcaagatcgttaataaatcgaagatctattggtgatgaggaagaaatctttgaaat |
679 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||| || | ||| ||| | | | ||||||| | ||||||||||| || ||||||||| |
|
|
| T |
16447338 |
ggaaaaagttggagaagaatactttgatctactagtgtcgaggttgttgatacaactacgatctatcgatgatgaggaagcaaactttgaaat |
16447430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 587 - 628
Target Start/End: Original strand, 19223 - 19264
Alignment:
| Q |
587 |
ggaaaaagtcggagaagaatactttgatgaactagtgtcaag |
628 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19223 |
ggaaaaagtaggagaagaatactttgatgaactagtgtcaag |
19264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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