View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_high_27 (Length: 253)
Name: NF1566_high_27
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_high_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 54909866 - 54910106
Alignment:
| Q |
13 |
aatattactaacctatttcaacttgctttgatccagtaacaatataaccttcaactccacggacaatatccctttgataatgctgaaagaaataaataca |
112 |
Q |
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| T |
54909866 |
aatattactaacctatttcaacttgctttgatccagtaacaatataaccttcaactccacggacaatatccctttgataatgctgaaagaaataaataca |
54909965 |
T |
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| Q |
113 |
tgtcattatcagtaatgaaggaagggtataggttaaagtgaaacaaaacaaaattagaggattggtacagaggaaccaagtaacctttcctgcacgtgtg |
212 |
Q |
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| T |
54909966 |
tgtcattatcggtaatgaaggaagggtataggttaaagtgaaacagaacaaaattagaggattggtacagaggaaccaagtaacctttcctgcacgtgtg |
54910065 |
T |
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| Q |
213 |
gatatgtaaagcttctcaagcttctgatgttgttgaagctc |
253 |
Q |
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| T |
54910066 |
gatatgtaaagcttctcaagcttctgatgttgttgaagctc |
54910106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 27043598 - 27043682
Alignment:
| Q |
16 |
attactaacctatttcaacttgctttgatccagtaacaatataaccttcaactccacggacaatatccctttgataatgctgaaa |
100 |
Q |
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| T |
27043598 |
attacttacctatttcaacttgcttggatcctgtaacaatataaccttctactccacgaacaacgtccctttgataatgctgaaa |
27043682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 27044043 - 27044092
Alignment:
| Q |
193 |
taacctttcctgcacgtgtggatatgtaaagcttctcaagcttctgatgt |
242 |
Q |
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| T |
27044043 |
taaccttcccggcacgtgttgatatgtaaagtttctcaagtttctgatgt |
27044092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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