View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_high_29 (Length: 244)
Name: NF1566_high_29
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 5752600 - 5752832
Alignment:
| Q |
1 |
aacgagactacttcggtgctcatacatatgaaagggttgatatcgaggggtcgtaccatactaaatggttcaaacttgccaagaagttgaggatttagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| |||||||||||| |
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| T |
5752600 |
aacgagactacttcggtgctcatacatatgaaagggttgatatcgaggggtcgtaccatactgaatggttcaagcttgccaagcagtcgaggatttagat |
5752699 |
T |
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| Q |
101 |
tactgtatttgaactcttcaagattcctaataaatgtaatgttttttaatcaagactgtatgctgagttgagcttacatagctgcaattcggtgaagttt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
5752700 |
tactgtgtttgaactcttcaagattcctaataaatgtaatgttttttactcaagactgtatactgagttgagcttacatagctgcaatgcggtgaagttt |
5752799 |
T |
|
| Q |
201 |
atatataccattttgtactactcaattacttgg |
233 |
Q |
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|| ||||||||| ||||||||| |||||||||| |
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| T |
5752800 |
atttataccattctgtactacttaattacttgg |
5752832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 5756533 - 5756725
Alignment:
| Q |
20 |
tcatacatatgaaagggttgatatcgaggggtcgtaccatactaaatggttcaaacttgccaagaagttgaggatttagattactgtatttgaactcttc |
119 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||| ||| ||| ||||||||||||| ||||| ||||||||||| |
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| T |
5756533 |
tcatacatatgaaagggttgatatcgacgggtcttaccatactgaatggttcaagcttttaaagcagtcgaggatttagatttctgtagttgaactcttc |
5756632 |
T |
|
| Q |
120 |
aagattcctaataaatgtaatgttttttaatcaagactgtatgctgagttgagcttacatagctgcaattcggtgaagtttatatataccatt |
212 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5756633 |
aagattcctaataaatgtaatgttttttactcaagactgtatgctgagttgagcttacatagctgcaatgcggtgaagtttatatataccatt |
5756725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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