View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_high_35 (Length: 237)
Name: NF1566_high_35
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 55481540 - 55481321
Alignment:
| Q |
1 |
tggatcatgatttctcaataagaatcgtttctgtcatctccaaacgattaattaggcctattgtttcttgttattcaagcattttaattatttcatttat |
100 |
Q |
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| T |
55481540 |
tggatcatgatttctcaataagaatcgtttctgtcatctccaaacgattaattaggcctattgtttcttgttattcaagcattttaattatttcatttat |
55481441 |
T |
|
| Q |
101 |
tttttggtatagttattcaagtatttcaaccaggcctcaagtatttgaagtgatacgaaaataccgtttaagttgaagacaacaataaaaccatcaatat |
200 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55481440 |
tttttggtatagttattcaagtattttaatcaggcctcaagtatttgatgtgatacgaaaataccgtttaagttgaagacaacaataaaaccatcaatat |
55481341 |
T |
|
| Q |
201 |
tgtatgaaacaaattgttgg |
220 |
Q |
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|||| ||||||||||||||| |
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| T |
55481340 |
tgtacgaaacaaattgttgg |
55481321 |
T |
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